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Report for CCDS80970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80970.1 Public Mus musculus 9 B3gat1 23 108 98 CCDS HistoryNCBI Gene:76898Re-query CCDS DB by CCDS ID:80970.1Re-query CCDS DB by GeneID:76898See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115269.8 ENSMUSP00000110924.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115269.8Link to Ensembl Protein Viewer:ENSMUSP00000110924.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115269Re-query CCDS DB by Protein ID:ENSMUSP00000110924
Original member Current member EBI ENSMUST00000160899.7 ENSMUSP00000124067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160899.7Link to Ensembl Protein Viewer:ENSMUSP00000124067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160899Re-query CCDS DB by Protein ID:ENSMUSP00000124067
Original member Current member EBI ENSMUST00000159799.7 ENSMUSP00000124438.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159799.7Link to Ensembl Protein Viewer:ENSMUSP00000124438.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159799Re-query CCDS DB by Protein ID:ENSMUSP00000124438
Original member Current member NCBI NM_001310766.1 NP_001297695.1 Accepted alive Link to Nucleotide Sequence:NM_001310766.1Link to Protein Sequence:NP_001297695.1Re-query CCDS DB by Nucleotide ID:NM_001310766Re-query CCDS DB by Protein ID:NP_001297695Link to BLAST:NP_001297695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297695.1 347 Q9CW73-2 347 100% 0 0

Chromosomal Locations for CCDS 80970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 26751596 26751599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26751744 26751890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26755586 26756094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26756737 26757033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26757693 26757779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGGTAATGAGGAGCTGTGGGTGCAGCCAGCCTTGGAGATGCCGAAGAGACGGGACATCCTTGCGATTG
TCCTCATCGTGCTTCCCTGGACACTGCTCATCACCGTCTGGCACCAGAGCAGCCTCGCACCTCTGCTTGC
TGTGCACAAGGATGAGGGAAGTGACCCCCGCCATGAGGCACCACCTGGTGCGGACCCTAGGGAGTACTGC
ATGTCCGACCGTGACATCGTGGAAGTGGTGCGCACAGAGTACGTGTACACGAGGCCGCCACCCTGGTCCG
ACACGCTGCCCACCATCCATGTGGTGACGCCCACCTACAGTAGACCGGTGCAGAAGGCAGAGCTGACGCG
AATGGCCAACACACTACTGCATGTGCCCAACCTTCACTGGCTAGTGGTGGAGGATGCTCCACGCAGGACG
CCCCTCACCGCGCGCTTGCTGCGCGACACTGGCCTCAACTACACACACCTGCACGTAGAGACACCACGCA
ACTATAAGCTGCGAGGTGATGCCCGAGACCCTCGCATCCCACGTGGCACCATGCAGCGCAACCTGGCACT
GCGCTGGCTGCGGGAGACCTTCCCACGGAACTCTACTCAGCCAGGCGTAGTGTACTTCGCGGATGATGAC
AACACGTACAGTCTGGAGCTCTTTGAAGAGATGCGCAGCACAAGAAGGGTGTCCGTGTGGCCTGTGGCCT
TTGTTGGTGGCCTTCGGTATGAGGCCCCACGGGTGAATGGGGCAGGGAAAGTGGTTGGCTGGAAGACAGT
CTTCGACCCCCACCGGCCCTTTGCAATAGACATGGCTGGATTTGCTGTCAACCTCCGGCTCATCTTGCAG
CGAAGTCAAGCCTACTTTAAGCTACGTGGTGTGAAGGGAGGCTACCAGGAAAGCAGTCTCCTTCGAGAAC
TTGTCACCCTCAATGACCTGGAGCCCAAGGCAGCAAACTGTACCAAGATCTTGGTCTGGCATACACGAAC
AGAGAAGCCAGTGCTGGTCAATGAGGGGAAGAAGGGCTTCACCGACCCCTCAGTGGAGATCTGA

Translation (347 aa):
MGNEELWVQPALEMPKRRDILAIVLIVLPWTLLITVWHQSSLAPLLAVHKDEGSDPRHEAPPGADPREYC
MSDRDIVEVVRTEYVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRT
PLTARLLRDTGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDD
NTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQ
RSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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