NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80323.1 Public Mus musculus 5 Rufy3 23 108 98 CCDS HistoryNCBI Gene:52822Re-query CCDS DB by CCDS ID:80323.1Re-query CCDS DB by GeneID:52822See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80323.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196894.4 ENSMUSP00000143770.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196894.4Link to Ensembl Protein Viewer:ENSMUSP00000143770.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196894Re-query CCDS DB by Protein ID:ENSMUSP00000143770
Original member NCBI NM_001289775.1 NP_001276704.1 Updated not alive Link to Nucleotide Sequence:NM_001289775.1Link to Protein Sequence:NP_001276704.1Re-query CCDS DB by Nucleotide ID:NM_001289775Re-query CCDS DB by Protein ID:NP_001276704
Current member NCBI NM_001289775.2 NP_001276704.1 Accepted alive Link to Nucleotide Sequence:NM_001289775.2Link to Protein Sequence:NP_001276704.1Re-query CCDS DB by Nucleotide ID:NM_001289775Re-query CCDS DB by Protein ID:NP_001276704Link to BLAST:NP_001276704.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276704.1 519 Q9D394-4 519 100% 0 0

Chromosomal Locations for CCDS 80323.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88565149 88565476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88614941 88615114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88616462 88616579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88617335 88617436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88621301 88621424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88627221 88627282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88628025 88628090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88630537 88630606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88632439 88632531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88635192 88635275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88637192 88637359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88638981 88639078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88640589 88640661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCAGAGTCGCCGGCGCCCGGCGCGGCTGCTGAAAGTTGCGGCGAAGAGCAGGAGAGGGGCGGGGAGC
GGCGCCCCTCCGAGCCGCTGGAACCGCGCGGTGCTAGCGCCCGCGGCGCGGACCGGGAGGACGAGGCGGG
GCCCTCGGAGCCGGACTCGCCGGTGGCCGCCCCCTTCTTCCTCCTCTACCCGGGCGATGGAGGCGCGGGC
TTCACAGCGCGCCCGCCACCGCAGCGCGCCTGGAGGACCCCGCCGTCGCCCGGCTCCCCGCTGCCCTTCC
TGCTGCTGAGCTACCCGAGCGGCGGCAGCGGCGGCGGAGGCAAGCACCATCCCAATTATCTCATGGCTAA
CGAACGCATGAACCTGATGAACATGGCAAAGCTGAGCATCAAGGGCTTGATTGAATCGGCTCTGAATCTG
GGGCGGACCCTGGACTCTGACTACGCACCTCTCCAGCAGTTTTTCGTGGTGATGGAACACTGCCTGAAAC
ACGGCTTGAAAGCCAAGAAAACTTTTCTTGGACAAAATAAATCCTTCTGGGGGCCTCTAGAGCTGGTGGA
GAAGCTTGTTCCAGAAGCTGCAGAAATAACAGCGAGTGTAAAAGACCTCCCAGGACTCAAGACACCAGTT
GGCAGAGGAAGAGCCTGGCTTCGGTTGGCATTGATGCAAAAGAAGCTTTCTGAGTATATGAAAGCCTTGA
TCAATAAGAAGGAACTTCTCAGTGAGTTCTATGAAGTCAATGCCCTCATGATGGAAGAAGAAGGAGCTAT
TATCGCTGGTCTCCTGGTGGGTCTGAATGTCATCGATGCCAATTTCTGCATGAAAGGAGAAGACCTGGAC
TCTCAGGTTGGAGTTATAGATTTTTCGATGTATCTCAAAGATGGAAACAGTAGTAAAGGTAGTGAAGGGG
ATGGACAGATTACTGCGATCCTAGACCAGAAGAACTATGTAGAAGAACTCAACAGACATCTGAATGCAAC
TGTAAACAACCTTCAGACAAAAGTAGATCTGTTAGAAAAATCCAACACTAAATTGACAGAAGAACTTGCC
GTTGCCAACAACAGAATTATTACCTTACAAGAAGAAATGGAACGAGTTAAAGAAGAAAGCTCCTATCTAC
TGGAATCCAATCGGAAGGGTCCTAAACAAGACAGAACTGCAGAAGGGCAAGCGCTGAGCGAAGCCAGAAA
GCATCTAAAGGAGGAGACACAGTTAAGATTGGATGTCGAGAAGGAGCTGGAGCTGCAGATCAGCATGAGG
CAGGAGATGGAACTGGCTATGAAGATGCTGGAGAAGGATGTCTGTGAGAAGCAGGATGCCCTGGTGTCTC
TGCGGCAGCAGCTGGACGATCTCCGGGCTCTTAAGCATGAGCTCGCCTTTAAACTGCAGAGTTCAGACCT
AGGAGTGAAACAGAAAAGTGAATTAAACAGTCGCTTGGAAGAAAAGACCAATCAGATGGCTGCCACCATT
AAACAGCTGGAGCAAAGTGAAAAAGATTTGGTGAAACAGGCAAAGACCTTAAATAGTGCAGCAAATAAAC
TGATCCCAAAGCACCATTAA

Translation (519 aa):
MAESPAPGAAAESCGEEQERGGERRPSEPLEPRGASARGADREDEAGPSEPDSPVAAPFFLLYPGDGGAG
FTARPPPQRAWRTPPSPGSPLPFLLLSYPSGGSGGGGKHHPNYLMANERMNLMNMAKLSIKGLIESALNL
GRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAEITASVKDLPGLKTPV
GRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEVNALMMEEEGAIIAGLLVGLNVIDANFCMKGEDLD
SQVGVIDFSMYLKDGNSSKGSEGDGQITAILDQKNYVEELNRHLNATVNNLQTKVDLLEKSNTKLTEELA
VANNRIITLQEEMERVKEESSYLLESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVEKELELQISMR
QEMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEEKTNQMAATI
KQLEQSEKDLVKQAKTLNSAANKLIPKHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH