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Report for CCDS29598.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29598.1 Public Mus musculus 19 Ms4a7 23 108 98 CCDS HistoryNCBI Gene:109225Re-query CCDS DB by CCDS ID:29598.1Re-query CCDS DB by GeneID:109225See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29598.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067532.10 ENSMUSP00000064534.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067532.10Link to Ensembl Protein Viewer:ENSMUSP00000064534.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067532Re-query CCDS DB by Protein ID:ENSMUSP00000064534
Original member Current member NCBI NM_027836.6 NP_082112.3 Accepted alive Link to Nucleotide Sequence:NM_027836.6Link to Protein Sequence:NP_082112.3Re-query CCDS DB by Nucleotide ID:NM_027836Re-query CCDS DB by Protein ID:NP_082112Link to BLAST:NP_082112.3

Chromosomal Locations for CCDS 29598.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11321517 11321582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11322299 11322400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11324422 11324628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11325807 11325863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11327925 11328050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11333207 11333353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGCGTCTACAGCTTGGCACCAAGAACATTGGGTGGGACTGCTTTCCAAAGGACATCATTATCCACAAAA
GAGAGAAAACTGGACATACATATGAAAAAGAAGATGACCTGCTGATTGGAGTGCCTAGTGAAGCCACAGT
TCTTGGAACCATCCAGCTACTATGTGCCCTGATACTTGCAAGCTTTGGGGGCATTTTGGTGTCAGCTTCC
TACTTCAACCCAGAAGTTTCCACCACTTTGATATCTGGATACCTGTTTATTGGATCCCTCTGTTTTGCCA
TTGCTGGAATTCTCTCCATTATCTCTGAAAAAATCTCAACCAAACCCTTTGCACTGAGCAGCCTGGCCTC
CAATGTAGCAAGCTCTGTTGTTGCCGTCATTGGCCTCTTCCTCTTCACCTATTGTCTGATAGCCCTGGGG
AGTGCTTTCCCACACTGTAACTCAGAAAAGAAATTCCTGTCCTTATTGTCTTACTTGAAATCCCACCATT
GGAAGAATGAAGACAAGAACTGTTACCTGGCTTATGTCGGTGCTATGAGTGCTCTGGGGATGATGCTTCT
CTTCACTGTGCTGGAGGTTTTCCTAGCTGGATACAGTTCTATCTTTTGGTGGAAGCAAGTCTACTCCAAC
AAACCTGGGGGTACATTTTTCTTGCCTCAATCACAAGATCATACCCAACTTGTTAAAAGCAATTTGTTGC
AATAA

Translation (234 aa):
MRLQLGTKNIGWDCFPKDIIIHKREKTGHTYEKEDDLLIGVPSEATVLGTIQLLCALILASFGGILVSAS
YFNPEVSTTLISGYLFIGSLCFAIAGILSIISEKISTKPFALSSLASNVASSVVAVIGLFLFTYCLIALG
SAFPHCNSEKKFLSLLSYLKSHHWKNEDKNCYLAYVGAMSALGMMLLFTVLEVFLAGYSSIFWWKQVYSN
KPGGTFFLPQSQDHTQLVKSNLLQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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