| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AB007949 | Gold_bad | 1 | 6111 | 1 | 60 | 0 | 1 | 177282361 | 177282302 |
| AB007949 | Gold_excellent | 12 | 6111 | 63 | 6049 | 3 | 1 | 177282382 | 177321896 |
| AB037810 | Gold_bad | 1 | 5801 | 1 | 72 | 1 | 1 | 229734758 | 229734686 |
| AB037810 | Gold_bad | 1 | 5801 | 66 | 64 | 0 | 1 | 229734667 | 229734731 |
| AB037810 | Gold_excellent | 21 | 5801 | 128 | 5674 | 2 | 1 | 229734700 | 229617983 |
| AB067524 | Gold_bad | 1 | 3515 | 1 | 55 | 0 | 1 | 15017586 | 15017532 |
| AB067524 | Gold_excellent | 16 | 3515 | 56 | 3460 | 2 | 1 | 15030974 | 15073751 |
| AK091338 | Gold_bad | 1 | 2566 | 2543 | 43 | 0 | 1 | 202167562 | 202167604 |
| AK091338 | Gold_excellent | 1 | 2566 | 20 | 2524 | 3 | 1 | 202169383 | 202166860 |
| AK096567 | Gold_bad | 1 | 2972 | 1 | 353 | 10 | 1 | 145473161 | 145473509 |
| AK096567 | Gold_good | 2 | 2972 | 354 | 2619 | 5 | 1 | 145442012 | 145439385 |
| AK096600 | Gold_bad | 1 | 2827 | 773 | 76 | 3 | 1 | 148719633 | 148719558 |
| AK096600 | Gold_bad | 2 | 2827 | 1 | 779 | 0 | 19 | 2672361 | 2668155 |
| AK096600 | Gold_excellent | 12 | 2827 | 835 | 1993 | 0 | 1 | 148716033 | 148726549 |
| AK128532 | Gold_bad | 2 | 3522 | 2394 | 1129 | 1 | 1 | 2353555 | 2350772 |
| AK128532 | Gold_good | 3 | 3522 | 35 | 2359 | 34 | 1 | 2365835 | 2368906 |
| AL080219 | Gold_bad | 1 | 1575 | 18 | 102 | 0 | 1 | 100218398 | 100218297 |
| AL080219 | Gold_excellent | 1 | 1575 | 117 | 1459 | 4 | 1 | 100218351 | 100219814 |
| AL137687 | Gold_bad | 1 | 797 | 1 | 41 | 0 | 1 | 176128614 | 176128574 |
| AL137687 | Gold_partial | 1 | 797 | 42 | 737 | 2 | 1 | 176127829 | 176128565 |
| BC018959 | Gold_bad | 1 | 2010 | 8 | 64 | 2 | 1 | 204282038 | 204282103 |
| BC018959 | Gold_excellent | 2 | 2010 | 67 | 1944 | 1 | 1 | 204282063 | 204278712 |
| BC041045 | Gold_bad | 1 | 1467 | 1 | 44 | 0 | 1 | 175303087 | 175303131 |
| BC041045 | Gold_bad | 1 | 1467 | 41 | 309 | 1 | 1 | 175302989 | 175302681 |
| BC041045 | Gold_excellent | 8 | 1467 | 347 | 1121 | 0 | 1 | 175303033 | 175651409 |
| BC056910 | Gold_bad | 1 | 2548 | 35 | 64 | 1 | 1 | 198105478 | 198105415 |
| BC056910 | Gold_excellent | 3 | 2548 | 95 | 2463 | 1 | 1 | 198105435 | 198110800 |