Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK000030 | Gold_bad | 2 | 786 | 502 | 285 | 12 | 4 | 26539349 | 26561237 |
AK000030 | Gold_dubious | 1 | 786 | 1 | 526 | 5 | 10 | 133613069 | 133612544 |
AK023981 | Gold_dubious | 1 | 1719 | 1 | 1719 | 38 | 10 | 73338096 | 73339811 |
AK094284 | Gold_dubious | 1 | 1853 | 1 | 1853 | 38 | 10 | 74343648 | 74341796 |
AK097584 | Gold_dubious | 1 | 1688 | 58 | 1631 | 29 | 10 | 133770363 | 133768736 |
AK124186 | Gold_dubious | 1 | 2007 | 1 | 2007 | 35 | 10 | 134668392 | 134670397 |
AK125237 | Gold_bad | 1 | 2222 | 1163 | 33 | 0 | 2 | 161738244 | 161738212 |
AK125237 | Gold_bad | 1 | 2222 | 1857 | 75 | 5 | 5 | 54920043 | 54919967 |
AK125237 | Gold_dubious | 4 | 2222 | 1 | 643 | 1 | 10 | 27551697 | 27581759 |
AK126007 | Gold_dubious | 2 | 3218 | 1 | 440 | 0 | 10 | 46973164 | 46969500 |
AK128491 | Gold_bad | 1 | 4174 | 2191 | 30 | 0 | 4 | 84870241 | 84870271 |
AK128491 | Gold_bad | 1 | 4174 | 2298 | 33 | 0 | 15 | 33360170 | 33360203 |
AK128491 | Gold_dubious | 1 | 4174 | 2069 | 41 | 1 | 10 | 111385718 | 111385759 |
AK130427 | Gold_dubious | 2 | 1700 | 1 | 1700 | 35 | 10 | 14041740 | 14040034 |
BC022263 | Gold_dubious | 6 | 1026 | 1 | 592 | 2 | 10 | 51989988 | 51940588 |
BC030097 | Gold_dubious | 1 | 830 | 1 | 829 | 13 | 10 | 69460053 | 69459225 |
BC047402 | Gold_dubious | 2 | 1616 | 1 | 1616 | 32 | 10 | 18947958 | 18945171 |