Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK027712 | Gold_bad | 1 | 3614 | 2763 | 40 | 1 | 7 | 99280495 | 99280456 |
AK027712 | Gold_dubious | 7 | 3614 | 1 | 1539 | 4 | 12 | 131996999 | 132018379 |
AK091909 | Gold_dubious | 1 | 2296 | 2 | 2295 | 38 | 12 | 29714971 | 29712679 |
AK092223 | Gold_dubious | 1 | 2017 | 1 | 2017 | 33 | 12 | 131586441 | 131584419 |
AK094009 | Gold_bad | 1 | 2580 | 497 | 40 | 1 | 17 | 74022672 | 74022633 |
AK094009 | Gold_dubious | 1 | 2580 | 1695 | 886 | 0 | 12 | 7058863 | 7057978 |
AK122596 | Gold_dubious | 9 | 2417 | 1 | 2417 | 47 | 12 | 7791385 | 7771623 |
AK124574 | Gold_dubious | 1 | 3425 | 1 | 3425 | 60 | 12 | 8381402 | 8384825 |
AK126568 | Gold_dubious | 14 | 2254 | 1 | 2254 | 34 | 12 | 120548964 | 120614663 |
AK126884 | Gold_dubious | 5 | 3448 | 2 | 3447 | 77 | 12 | 48560717 | 48555142 |
AK127309 | Gold_dubious | 1 | 3462 | 3419 | 43 | 0 | 12 | 12822186 | 12822144 |
AK127601 | Gold_dubious | 4 | 1821 | 1 | 1819 | 50 | 12 | 48560724 | 48557632 |
AK130510 | Gold_bad | 1 | 2344 | 2 | 821 | 18 | 12 | 109340755 | 109339935 |
AK130510 | Gold_dubious | 4 | 2344 | 829 | 1516 | 25 | 12 | 109351800 | 109340787 |
AL122049 | Gold_dubious | 2 | 1285 | 1 | 1268 | 31 | 12 | 26115882 | 26128481 |
BC006164 | Gold_bad | 1 | 1582 | 1 | 488 | 7 | 12 | 8832135 | 8832622 |
BC006164 | Gold_dubious | 3 | 1582 | 790 | 677 | 12 | 12 | 8831612 | 8839651 |
BC007974 | Gold_dubious | 2 | 416 | 1 | 416 | 7 | 12 | 51720964 | 51721866 |
BC016943 | Gold_dubious | 1 | 2136 | 1 | 2136 | 37 | 12 | 67533365 | 67531225 |
BC017767 | Gold_dubious | 5 | 1045 | 1 | 1045 | 18 | 12 | 48047512 | 48171193 |
BC029276 | Gold_bad | 1 | 985 | 3 | 54 | 1 | 8 | 70652301 | 70652248 |
BC029276 | Gold_bad | 1 | 985 | 228 | 366 | 1 | 1 | 91324949 | 91324584 |
BC029276 | Gold_dubious | 3 | 985 | 706 | 224 | 8 | 12 | 126004086 | 126003701 |
BC030712 | Gold_dubious | 17 | 3237 | 7 | 1899 | 3 | 12 | 94838842 | 94763295 |
BC033064 | Gold_dubious | 5 | 1052 | 1 | 1052 | 23 | 12 | 47945156 | 47953381 |
BC034029 | Gold_dubious | 2 | 1159 | 1 | 1159 | 19 | 12 | 132009010 | 132012120 |
BC037811 | Gold_dubious | 3 | 1571 | 4 | 1568 | 25 | 12 | 107806244 | 107804607 |
BC044827 | Gold_dubious | 4 | 1160 | 1 | 1160 | 19 | 12 | 11399777 | 11396024 |
BC047907 | Gold_dubious | 3 | 2793 | 104 | 2690 | 44 | 12 | 54333505 | 54371188 |