Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK027712 Gold_bad 1 3614 2763 40 1 7 99280495 99280456
AK027712 Gold_dubious 7 3614 1 1539 4 12 131996999 132018379
AK091909 Gold_dubious 1 2296 2 2295 38 12 29714971 29712679
AK092223 Gold_dubious 1 2017 1 2017 33 12 131586441 131584419
AK094009 Gold_bad 1 2580 497 40 1 17 74022672 74022633
AK094009 Gold_dubious 1 2580 1695 886 0 12 7058863 7057978
AK122596 Gold_dubious 9 2417 1 2417 47 12 7791385 7771623
AK124574 Gold_dubious 1 3425 1 3425 60 12 8381402 8384825
AK126568 Gold_dubious 14 2254 1 2254 34 12 120548964 120614663
AK126884 Gold_dubious 5 3448 2 3447 77 12 48560717 48555142
AK127309 Gold_dubious 1 3462 3419 43 0 12 12822186 12822144
AK127601 Gold_dubious 4 1821 1 1819 50 12 48560724 48557632
AK130510 Gold_bad 1 2344 2 821 18 12 109340755 109339935
AK130510 Gold_dubious 4 2344 829 1516 25 12 109351800 109340787
AL122049 Gold_dubious 2 1285 1 1268 31 12 26115882 26128481
BC006164 Gold_bad 1 1582 1 488 7 12 8832135 8832622
BC006164 Gold_dubious 3 1582 790 677 12 12 8831612 8839651
BC007974 Gold_dubious 2 416 1 416 7 12 51720964 51721866
BC016943 Gold_dubious 1 2136 1 2136 37 12 67533365 67531225
BC017767 Gold_dubious 5 1045 1 1045 18 12 48047512 48171193
BC029276 Gold_bad 1 985 3 54 1 8 70652301 70652248
BC029276 Gold_bad 1 985 228 366 1 1 91324949 91324584
BC029276 Gold_dubious 3 985 706 224 8 12 126004086 126003701
BC030712 Gold_dubious 17 3237 7 1899 3 12 94838842 94763295
BC033064 Gold_dubious 5 1052 1 1052 23 12 47945156 47953381
BC034029 Gold_dubious 2 1159 1 1159 19 12 132009010 132012120
BC037811 Gold_dubious 3 1571 4 1568 25 12 107806244 107804607
BC044827 Gold_dubious 4 1160 1 1160 19 12 11399777 11396024
BC047907 Gold_dubious 3 2793 104 2690 44 12 54333505 54371188