| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK024117 | Gold_bad | 6 | 3181 | 1774 | 1408 | 2 | 10 | 32577888 | 32561395 |
| AK024117 | Gold_partial | 4 | 3181 | 1 | 1737 | 9 | 12 | 31133253 | 31137943 |
| AK024951 | Gold_bad | 1 | 3501 | 2414 | 1088 | 2 | 12 | 7058860 | 7057773 |
| AK024951 | Gold_partial | 5 | 3501 | 1 | 2104 | 6 | 12 | 7136178 | 7132346 |
| AK026468 | Gold_bad | 1 | 2392 | 1269 | 952 | 2 | 12 | 6992121 | 6991171 |
| AK026468 | Gold_partial | 1 | 2392 | 1 | 1268 | 0 | 12 | 6988403 | 6987136 |
| AK027820 | Gold_partial | 13 | 1918 | 134 | 1785 | 2 | 12 | 107953263 | 107986746 |
| AK054820 | Gold_partial | 5 | 1727 | 395 | 1333 | 4 | 12 | 131182684 | 131175503 |
| AK055692 | Gold_bad | 1 | 1700 | 1668 | 33 | 0 | 12 | 94379457 | 94379500 |
| AK055692 | Gold_partial | 10 | 1700 | 1 | 1640 | 2 | 12 | 94370394 | 94410495 |
| AK055773 | Gold_partial | 5 | 2183 | 850 | 1334 | 2 | 12 | 131182685 | 131175503 |
| AK057820 | Gold_bad | 10 | 3342 | 1 | 1456 | 12 | 9 | 43969282 | 43995855 |
| AK057820 | Gold_partial | 8 | 3342 | 1804 | 1539 | 1 | 12 | 55368225 | 55343649 |
| AK074416 | Gold_bad | 3 | 758 | 12 | 340 | 4 | 12 | 6923447 | 6925290 |
| AK074416 | Gold_partial | 2 | 758 | 367 | 392 | 0 | 12 | 51777907 | 51782395 |
| AK091705 | Gold_partial | 1 | 2119 | 25 | 2095 | 2 | 12 | 54511892 | 54513986 |
| AK096775 | Gold_bad | 1 | 2482 | 18 | 31 | 0 | 5 | 65441105 | 65441075 |
| AK096775 | Gold_bad | 1 | 2482 | 86 | 121 | 3 | 12 | 126004086 | 126003965 |
| AK096775 | Gold_partial | 13 | 2482 | 221 | 2262 | 4 | 12 | 6996072 | 6955610 |
| AK098035 | Gold_bad | 1 | 2358 | 2328 | 31 | 0 | 15 | 30420037 | 30420007 |
| AK098035 | Gold_partial | 9 | 2358 | 1 | 2262 | 3 | 12 | 6431658 | 6445862 |
| AK123931 | Gold_partial | 1 | 2080 | 24 | 2057 | 6 | 12 | 105871264 | 105873321 |
| AK127328 | Gold_partial | 14 | 5131 | 1361 | 3771 | 1 | 12 | 120363159 | 120278946 |
| AK127497 | Gold_partial | 2 | 3296 | 89 | 3208 | 46 | 12 | 111299534 | 111346928 |
| AK130459 | Gold_bad | 1 | 1383 | 1083 | 301 | 1 | 10 | 95002460 | 95002761 |
| AK130459 | Gold_partial | 1 | 1383 | 1 | 882 | 0 | 12 | 120625114 | 120624233 |
| AK130793 | Gold_bad | 1 | 1469 | 56 | 204 | 1 | 4 | 39804151 | 39803948 |
| AK130793 | Gold_partial | 7 | 1469 | 259 | 1211 | 2 | 12 | 55323969 | 55318228 |
| AL133572 | Gold_partial | 10 | 7018 | 664 | 6355 | 10 | 12 | 120363159 | 120278936 |
| AL136759 | Gold_partial | 10 | 3465 | 1 | 3419 | 0 | 12 | 42438817 | 42408758 |
| AL137561 | Gold_partial | 10 | 2251 | 27 | 2225 | 11 | 12 | 131672136 | 131655856 |
| AL162062 | Gold_partial | 12 | 2368 | 1 | 2300 | 4 | 12 | 48330916 | 48299714 |
| AL831869 | Gold_bad | 1 | 484 | 415 | 54 | 0 | 12 | 54990523 | 54990577 |
| AL831869 | Gold_partial | 1 | 484 | 1 | 419 | 0 | 12 | 54991039 | 54990621 |
| AL831947 | Gold_partial | 7 | 3340 | 2 | 3256 | 9 | 12 | 31163492 | 31155860 |
| BC000812 | Gold_partial | 8 | 1284 | 1 | 1255 | 7 | 12 | 78831378 | 78717080 |
| BC007663 | Gold_bad | 2 | 2156 | 1438 | 691 | 0 | 19 | 14025181 | 14026785 |
| BC007663 | Gold_partial | 7 | 2156 | 46 | 1393 | 0 | 12 | 51629184 | 51632952 |
| BC007843 | Gold_bad | 7 | 3680 | 1865 | 1805 | 1 | 8 | 145173564 | 145170257 |
| BC007843 | Gold_partial | 8 | 3680 | 37 | 1831 | 2 | 12 | 6703483 | 6711302 |
| BC010133 | Gold_bad | 6 | 3917 | 1 | 1042 | 2 | 11 | 34902207 | 34868226 |
| BC010133 | Gold_partial | 1 | 3917 | 1087 | 2831 | 0 | 12 | 49744092 | 49741258 |
| BC012867 | Gold_partial | 10 | 2168 | 1 | 2126 | 3 | 12 | 51494155 | 51486601 |
| BC014085 | Gold_bad | 6 | 2078 | 1 | 774 | 4 | 19 | 12456545 | 12423182 |
| BC014085 | Gold_partial | 9 | 2078 | 811 | 1268 | 3 | 12 | 6513960 | 6517798 |
| BC018589 | Gold_partial | 7 | 1334 | 39 | 1244 | 0 | 12 | 51581998 | 51577238 |
| BC018899 | Gold_partial | 6 | 1635 | 620 | 1025 | 0 | 12 | 6848344 | 6850253 |
| BC018916 | Gold_bad | 3 | 749 | 1 | 343 | 0 | 19 | 8415877 | 8433467 |
| BC018916 | Gold_partial | 1 | 749 | 362 | 388 | 0 | 12 | 46653410 | 46653018 |
| BC020340 | Gold_partial | 17 | 2349 | 1 | 2323 | 0 | 12 | 120202029 | 120158114 |
| BC020387 | Gold_partial | 1 | 2252 | 9 | 2219 | 15 | 12 | 27844938 | 27842727 |
| BC021204 | Gold_partial | 8 | 2186 | 1 | 2160 | 8 | 12 | 55808960 | 55835629 |
| BC029858 | Gold_partial | 8 | 1588 | 31 | 1558 | 2 | 12 | 6884215 | 6893654 |
| BC032132 | Gold_partial | 3 | 877 | 11 | 867 | 4 | 12 | 51487825 | 51486601 |
| BC032611 | Gold_partial | 3 | 412 | 22 | 399 | 0 | 12 | 54796825 | 54797883 |
| BC033587 | Gold_bad | 1 | 3468 | 1 | 208 | 0 | 12 | 107921565 | 107921358 |
| BC033587 | Gold_partial | 8 | 3468 | 941 | 2528 | 3 | 12 | 107835197 | 107807128 |
| BC034008 | Gold_partial | 1 | 1507 | 30 | 1468 | 8 | 12 | 50675605 | 50677074 |
| BC035220 | Gold_bad | 1 | 2496 | 1405 | 1092 | 0 | 12 | 7058863 | 7057772 |
| BC035220 | Gold_partial | 7 | 2496 | 1 | 1098 | 2 | 12 | 7136184 | 7132346 |
| BC036829 | Gold_partial | 1 | 288 | 12 | 285 | 2 | 12 | 119850537 | 119850253 |
| BC038212 | Gold_partial | 4 | 628 | 1 | 616 | 2 | 12 | 25997137 | 25989972 |
| BC039019 | Gold_partial | 3 | 1957 | 47 | 1919 | 4 | 12 | 22378901 | 22368580 |
| BC039196 | Gold_partial | 10 | 3266 | 1 | 3225 | 2 | 12 | 7980034 | 7963679 |
| BC051915 | Gold_partial | 4 | 416 | 1 | 399 | 1 | 12 | 77874091 | 78182095 |
| BC058837 | Gold_bad | 1 | 1704 | 911 | 432 | 2 | 10 | 27093708 | 27093279 |
| BC058837 | Gold_partial | 7 | 1704 | 4 | 911 | 2 | 12 | 122237518 | 122226465 |
| BC061907 | Gold_partial | 1 | 758 | 29 | 747 | 5 | 12 | 51721516 | 51722259 |
| BC061923 | Gold_partial | 3 | 620 | 25 | 596 | 1 | 12 | 127948671 | 127950941 |
| BC063036 | Gold_partial | 4 | 1564 | 36 | 1541 | 5 | 12 | 47945145 | 47953381 |
| BC065289 | Gold_partial | 14 | 2345 | 1 | 2254 | 0 | 12 | 61146877 | 61215732 |
| BX537485 | Gold_bad | 1 | 4392 | 4315 | 59 | 2 | 2 | 201949417 | 201949476 |
| BX537485 | Gold_partial | 1 | 4392 | 1 | 4262 | 5 | 12 | 22532704 | 22528443 |
| BX648928 | Gold_partial | 3 | 2271 | 882 | 1390 | 4 | 12 | 120363160 | 120343634 |