Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK055081 Gold_dubious 2 2375 1 2375 40 13 43747069 43750757
AK127169 Gold_dubious 1 2009 3 2007 45 13 98975035 98973033
AL137719 Gold_dubious 1 735 1 735 14 13 62210165 62209429
AL359556 Gold_dubious 1 533 3 549 16 13 23714010 23714554
AL512729 Gold_dubious 1 3414 1 3414 52 13 65528727 65525313
BX640780 Gold_bad 1 3642 2553 37 1 19 9776147 9776111
BX640780 Gold_bad 1 3642 2646 45 1 4 177975878 177975834
BX640780 Gold_dubious 1 3642 3255 388 3 13 112373995 112374382
BX640791 Gold_dubious 3 2819 404 2416 41 13 94205462 94197329