Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK092053 Gold_excellent 2 2347 1 2328 1 13 112382126 112384454
AK096522 Gold_bad 1 2142 598 263 5 19 53391265 53391530
AK096522 Gold_good 3 2142 1 1914 16 13 44223758 44151364
BC064982 Gold_bad 1 1205 942 95 3 13 111570313 111570219
BC064982 Gold_partial 2 1205 1 1085 9 13 111570953 111569852
BX537667 Gold_excellent 2 8250 1 8229 19 13 96749541 96757749
BX647655 Gold_partial 3 5323 28 5204 23 13 112007888 112002774