Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AB046816 Gold_bad 1 4696 1 321 1 14 43634374 43634694
AB046816 Gold_bad 1 4696 321 48 0 14 43634708 43634661
AB046816 Gold_excellent 10 4696 365 4332 2 14 43634687 43660125
AK021423 Gold_bad 1 1454 1192 263 1 14 58556728 58556990
AK021423 Gold_partial 1 1454 34 1158 2 14 58558464 58557307
AL832288 Gold_bad 1 1187 1 81 0 14 88437005 88436925
AL832288 Gold_partial 7 1187 98 1076 1 14 88441544 88490001
BC011489 Gold_bad 1 1381 1 183 0 14 53248888 53248706
BC011489 Gold_excellent 1 1381 181 1201 5 14 53248863 53250068