Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK000582 | Gold_dubious | 4 | 1954 | 15 | 1955 | 43 | 15 | 69765990 | 69786773 |
AK000814 | Gold_dubious | 8 | 1376 | 3 | 1374 | 31 | 15 | 39836356 | 39845835 |
AK021987 | Gold_bad | 1 | 1862 | 7 | 624 | 10 | 15 | 62561300 | 62560677 |
AK021987 | Gold_dubious | 3 | 1862 | 498 | 1219 | 44 | 15 | 62602493 | 62596289 |
AK090925 | Gold_bad | 1 | 2360 | 1725 | 636 | 1 | 12 | 51838475 | 51837840 |
AK090925 | Gold_dubious | 3 | 2360 | 1 | 2010 | 47 | 15 | 81392443 | 81365199 |
AK097432 | Gold_dubious | 11 | 1914 | 1 | 1916 | 29 | 15 | 82789846 | 82782906 |
AK098742 | Gold_dubious | 2 | 1864 | 5 | 1860 | 37 | 15 | 63234010 | 63240906 |
AK130635 | Gold_bad | 1 | 1330 | 1 | 211 | 6 | 15 | 56929290 | 56929083 |
AK130635 | Gold_dubious | 2 | 1330 | 209 | 1122 | 24 | 15 | 56935684 | 56927184 |
BC015400 | Gold_dubious | 3 | 648 | 1 | 648 | 15 | 2 | 114450210 | 114451756 |
BC015400 | Gold_dubious | 3 | 648 | 1 | 648 | 15 | 15 | 100250482 | 100252027 |
BC047228 | Gold_dubious | 1 | 3154 | 1 | 3153 | 49 | 15 | 48372254 | 48375406 |
BC062414 | Gold_dubious | 3 | 1239 | 1 | 314 | 1 | 15 | 28402079 | 28395205 |