Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK000582 Gold_dubious 4 1954 15 1955 43 15 69765990 69786773
AK000814 Gold_dubious 8 1376 3 1374 31 15 39836356 39845835
AK021987 Gold_bad 1 1862 7 624 10 15 62561300 62560677
AK021987 Gold_dubious 3 1862 498 1219 44 15 62602493 62596289
AK090925 Gold_bad 1 2360 1725 636 1 12 51838475 51837840
AK090925 Gold_dubious 3 2360 1 2010 47 15 81392443 81365199
AK097432 Gold_dubious 11 1914 1 1916 29 15 82789846 82782906
AK098742 Gold_dubious 2 1864 5 1860 37 15 63234010 63240906
AK130635 Gold_bad 1 1330 1 211 6 15 56929290 56929083
AK130635 Gold_dubious 2 1330 209 1122 24 15 56935684 56927184
BC015400 Gold_dubious 3 648 1 648 15 2 114450210 114451756
BC015400 Gold_dubious 3 648 1 648 15 15 100250482 100252027
BC047228 Gold_dubious 1 3154 1 3153 49 15 48372254 48375406
BC062414 Gold_dubious 3 1239 1 314 1 15 28402079 28395205