Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK022464 | Gold_bad | 2 | 1491 | 1 | 1297 | 40 | 16 | 78616562 | 78639747 |
AK027226 | Gold_bad | 1 | 1958 | 1 | 1958 | 78 | 16 | 33081619 | 33083581 |
AK097358 | Gold_bad | 3 | 2510 | 2 | 2509 | 213 | 16 | 35074735 | 35065757 |
AK123224 | Gold_bad | 8 | 2366 | 1 | 2361 | 81 | 16 | 30546935 | 30528232 |
AK127737 | Gold_bad | 4 | 3708 | 1 | 3708 | 314 | 16 | 35074565 | 35064717 |
BC017406 | Gold_bad | 1 | 465 | 2 | 464 | 16 | 16 | 52907635 | 52907172 |
BC028059 | Gold_bad | 6 | 1153 | 1 | 1153 | 35 | 16 | 1220175 | 1218337 |
BC029818 | Gold_bad | 3 | 397 | 1 | 397 | 12 | 16 | 31475769 | 31475111 |
BC031025 | Gold_bad | 1 | 1219 | 1 | 1219 | 37 | 16 | 11268541 | 11269755 |
BC040830 | Gold_bad | 1 | 417 | 368 | 50 | 0 | 17 | 19511350 | 19511301 |
BC040830 | Gold_bad | 6 | 417 | 18 | 365 | 23 | 16 | 1939228 | 1952536 |
BC051852 | Gold_bad | 5 | 1146 | 1 | 1146 | 35 | 16 | 1219957 | 1218338 |
BC062540 | Gold_bad | 1 | 2222 | 1958 | 42 | 1 | 6 | 90170725 | 90170684 |
BC062540 | Gold_bad | 3 | 2222 | 509 | 1416 | 165 | 16 | 35069032 | 35075957 |