| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AB046829 | Gold_partial | 8 | 4683 | 27 | 4613 | 20 | 16 | 84311409 | 84290181 |
| AK000545 | Gold_bad | 1 | 2137 | 1 | 70 | 0 | 12 | 44234709 | 44234640 |
| AK000545 | Gold_partial | 11 | 2137 | 108 | 2030 | 4 | 16 | 87796313 | 87892558 |
| AK000679 | Gold_partial | 9 | 2215 | 34 | 2182 | 3 | 16 | 31546715 | 31536875 |
| AK021563 | Gold_bad | 2 | 1414 | 860 | 555 | 0 | 6 | 79907704 | 79906560 |
| AK021563 | Gold_partial | 7 | 1414 | 2 | 829 | 4 | 16 | 72475344 | 72598035 |
| AK022409 | Gold_partial | 4 | 2354 | 1 | 2110 | 5 | 16 | 30145198 | 30142720 |
| AK024121 | Gold_bad | 2 | 1601 | 166 | 673 | 2 | 3 | 56664778 | 56660238 |
| AK024121 | Gold_partial | 1 | 1601 | 833 | 769 | 6 | 16 | 19096120 | 19096882 |
| AK026947 | Gold_partial | 1 | 1932 | 1 | 1840 | 6 | 16 | 2587439 | 2589276 |
| AK027135 | Gold_bad | 10 | 2187 | 1 | 960 | 0 | 16 | 69875982 | 69833720 |
| AK027135 | Gold_partial | 2 | 2187 | 984 | 1204 | 12 | 16 | 74204272 | 74205486 |
| AK055337 | Gold_partial | 8 | 3368 | 1 | 3246 | 9 | 16 | 3185445 | 3193092 |
| AK057850 | Gold_bad | 1 | 1568 | 1189 | 287 | 1 | 16 | 1768060 | 1767774 |
| AK057850 | Gold_partial | 5 | 1568 | 1 | 1202 | 6 | 16 | 1772573 | 1766814 |
| AK093246 | Gold_partial | 7 | 2049 | 1 | 1998 | 4 | 16 | 89370859 | 89374719 |
| AK093687 | Gold_bad | 1 | 2150 | 2082 | 69 | 0 | X | 70131532 | 70131601 |
| AK093687 | Gold_partial | 1 | 2150 | 3 | 2031 | 11 | 16 | 2582072 | 2584102 |
| AK096064 | Gold_partial | 2 | 2285 | 1 | 2191 | 13 | 16 | 89200484 | 89198284 |
| AK123983 | Gold_partial | 1 | 2550 | 1 | 1805 | 6 | 16 | 80797230 | 80795427 |
| AK127505 | Gold_bad | 1 | 2225 | 1465 | 761 | 0 | 17 | 18429943 | 18430703 |
| AK127505 | Gold_partial | 1 | 2225 | 1 | 1230 | 4 | 16 | 2506319 | 2507550 |
| AK130042 | Gold_bad | 1 | 2494 | 927 | 1456 | 2 | 10 | 53282717 | 53284172 |
| AK130042 | Gold_bad | 1 | 2494 | 2377 | 118 | 4 | X | 148739068 | 148738951 |
| AK130042 | Gold_partial | 1 | 2494 | 1 | 738 | 8 | 16 | 23183723 | 23184459 |
| AK131085 | Gold_bad | 6 | 5381 | 3538 | 889 | 13 | 16 | 15188678 | 15179222 |
| AK131085 | Gold_bad | 8 | 5381 | 4427 | 920 | 14 | 16 | 15002108 | 15012354 |
| AK131085 | Gold_partial | 4 | 5381 | 1 | 2153 | 28 | 16 | 16428072 | 16430509 |
| AL049271 | Gold_partial | 1 | 106 | 3 | 85 | 0 | 16 | 4650924 | 4651008 |
| AL136762 | Gold_partial | 1 | 896 | 1 | 842 | 0 | 16 | 87118743 | 87117902 |
| AL136763 | Gold_partial | 21 | 2688 | 1 | 2657 | 2 | 16 | 20784396 | 21053820 |
| AL137711 | Gold_partial | 3 | 2265 | 41 | 2225 | 1 | 16 | 89870697 | 89865155 |
| AL834428 | Gold_partial | 6 | 2319 | 1 | 2153 | 7 | 16 | 1991082 | 1987654 |
| BC000484 | Gold_partial | 14 | 1610 | 41 | 1579 | 0 | 16 | 21931255 | 21961219 |
| BC007287 | Gold_partial | 8 | 3323 | 1 | 3201 | 8 | 16 | 3185424 | 3193090 |
| BC007598 | Gold_partial | 8 | 2662 | 1 | 2579 | 8 | 16 | 3187862 | 3193090 |
| BC007617 | Gold_bad | 1 | 3537 | 3110 | 410 | 5 | 11 | 72230978 | 72231387 |
| BC007617 | Gold_bad | 9 | 3537 | 993 | 2111 | 2 | 11 | 118437931 | 118432716 |
| BC007617 | Gold_partial | 1 | 3537 | 22 | 937 | 2 | 16 | 2546858 | 2545921 |
| BC007700 | Gold_bad | 5 | 1537 | 997 | 550 | 0 | 6 | 34439855 | 34432088 |
| BC007700 | Gold_partial | 6 | 1537 | 10 | 917 | 1 | 16 | 1954625 | 1952063 |
| BC007937 | Gold_bad | 12 | 3390 | 50 | 1596 | 0 | 19 | 10078026 | 10082970 |
| BC007937 | Gold_partial | 1 | 3390 | 1646 | 1712 | 16 | 16 | 55519007 | 55517307 |
| BC010660 | Gold_partial | 9 | 1490 | 30 | 1461 | 0 | 16 | 30114742 | 30119371 |
| BC011452 | Gold_bad | 1 | 531 | 17 | 81 | 1 | 2 | 42533576 | 42533496 |
| BC011452 | Gold_partial | 1 | 531 | 119 | 413 | 0 | 16 | 70471705 | 70471291 |
| BC012730 | Gold_partial | 13 | 2027 | 5 | 1953 | 14 | 16 | 67339010 | 67352804 |
| BC012772 | Gold_partial | 3 | 1050 | 4 | 925 | 6 | 16 | 3192165 | 3193090 |
| BC014135 | Gold_bad | 3 | 2555 | 2211 | 334 | 0 | 2 | 217568726 | 217566533 |
| BC014135 | Gold_partial | 10 | 2555 | 63 | 2150 | 2 | 16 | 23656773 | 23668241 |
| BC017119 | Gold_partial | 9 | 1588 | 26 | 1563 | 0 | 16 | 2195426 | 2199317 |
| BC017252 | Gold_bad | 3 | 2712 | 915 | 849 | 0 | 3 | 101469556 | 101496065 |
| BC017252 | Gold_bad | 5 | 2712 | 9 | 869 | 1 | 1 | 170685871 | 170696531 |
| BC017252 | Gold_partial | 6 | 2712 | 1800 | 922 | 1 | 16 | 1954630 | 1952063 |
| BC020336 | Gold_partial | 6 | 935 | 23 | 908 | 1 | 16 | 1954616 | 1952063 |
| BC021284 | Gold_partial | 12 | 1956 | 7 | 1880 | 14 | 16 | 67347612 | 67352804 |
| BC033653 | Gold_bad | 3 | 1288 | 12 | 359 | 0 | 16 | 56426837 | 56428128 |
| BC033653 | Gold_partial | 5 | 1288 | 399 | 881 | 4 | 16 | 67657029 | 67681422 |
| BC041062 | Gold_bad | 2 | 2017 | 1357 | 661 | 1 | 11 | 718948 | 719626 |
| BC041062 | Gold_partial | 5 | 2017 | 1 | 1317 | 8 | 16 | 57619946 | 57626247 |
| BC041086 | Gold_partial | 18 | 3879 | 20 | 3624 | 0 | 16 | 67349983 | 67356925 |
| BC062734 | Gold_partial | 3 | 403 | 6 | 397 | 0 | 16 | 56435090 | 56436420 |
| BX537628 | Gold_bad | 1 | 2015 | 1 | 55 | 2 | 17 | 19517695 | 19517750 |
| BX537628 | Gold_bad | 1 | 2015 | 174 | 132 | 1 | 5 | 71230815 | 71230947 |
| BX537628 | Gold_partial | 1 | 2015 | 301 | 1715 | 2 | 16 | 48352314 | 48350598 |
| BX647512 | Gold_partial | 6 | 1620 | 1 | 1565 | 7 | 16 | 21148346 | 21580453 |
| BX648557 | Gold_partial | 3 | 3621 | 1 | 3279 | 25 | 16 | 81907615 | 81911825 |