Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK021656 | Gold_bad | 1 | 1990 | 432 | 271 | 2 | 17 | 42701094 | 42701365 |
AK021656 | Gold_excellent | 10 | 1990 | 1 | 1732 | 2 | 17 | 42694562 | 42715010 |
AK025259 | Gold_bad | 3 | 2058 | 611 | 344 | 0 | 17 | 74207400 | 74208054 |
AK025259 | Gold_partial | 12 | 2058 | 1 | 1691 | 12 | 17 | 74209640 | 74214119 |
AK026913 | Gold_partial | 5 | 2635 | 1 | 1978 | 0 | 17 | 38791855 | 38809267 |
AK027322 | Gold_partial | 11 | 2008 | 1 | 1683 | 4 | 17 | 74653551 | 74632314 |
AK074512 | Gold_bad | 1 | 1648 | 460 | 563 | 4 | 17 | 40928513 | 40927951 |
AK074512 | Gold_good | 2 | 1648 | 1 | 1111 | 15 | 17 | 40948439 | 40928819 |
AK094552 | Gold_partial | 10 | 2800 | 1 | 1986 | 2 | 17 | 28589400 | 28657998 |
AK095738 | Gold_partial | 2 | 2410 | 1 | 2383 | 14 | 17 | 39156757 | 39154380 |
AK096344 | Gold_good | 11 | 2858 | 1 | 2834 | 17 | 17 | 79089086 | 79112000 |
AK096802 | Gold_good | 9 | 2592 | 1 | 2568 | 18 | 17 | 79089406 | 79112001 |
AK097833 | Gold_bad | 1 | 2506 | 348 | 73 | 0 | 17 | 40493697 | 40493770 |
AK097833 | Gold_excellent | 6 | 2506 | 1 | 2448 | 3 | 17 | 40491978 | 40500357 |
AK123075 | Gold_bad | 2 | 2463 | 601 | 162 | 0 | 17 | 40718562 | 40718112 |
AK123075 | Gold_partial | 10 | 2463 | 2 | 2266 | 4 | 17 | 40719651 | 40714271 |
AK130064 | Gold_bad | 3 | 1357 | 259 | 349 | 1 | 17 | 74351785 | 74351278 |
AK130064 | Gold_excellent | 8 | 1357 | 1 | 1005 | 2 | 17 | 74358396 | 74351150 |
AK130183 | Gold_partial | 2 | 1419 | 1 | 1398 | 1 | 17 | 62699537 | 62698167 |
AL157485 | Gold_partial | 2 | 3261 | 1 | 3225 | 18 | 17 | 78612761 | 78609546 |
AL832648 | Gold_good | 12 | 5532 | 28 | 5494 | 22 | 17 | 8539830 | 8590238 |
AL834239 | Gold_partial | 6 | 2112 | 2 | 1458 | 0 | 17 | 38750537 | 38808323 |
BC007838 | Gold_partial | 10 | 2544 | 1 | 2440 | 3 | 17 | 81285090 | 81251266 |
BC012130 | Gold_bad | 1 | 4082 | 1388 | 101 | 1 | 17 | 79872895 | 79872795 |
BC012130 | Gold_bad | 2 | 4082 | 1484 | 351 | 1 | 17 | 79872220 | 79871653 |
BC012130 | Gold_excellent | 26 | 4082 | 1 | 3592 | 6 | 17 | 79896870 | 79863517 |
BC012428 | Gold_partial | 2 | 1295 | 11 | 1249 | 3 | 17 | 38063041 | 38064291 |
BC025743 | Gold_partial | 20 | 2182 | 1 | 2152 | 5 | 17 | 42385691 | 42353978 |
BC025965 | Gold_partial | 7 | 3143 | 1 | 2490 | 0 | 17 | 38750541 | 38809267 |
BC034673 | Gold_partial | 29 | 4964 | 1 | 4717 | 5 | 17 | 4943192 | 5001969 |
BC041700 | Gold_good | 21 | 5372 | 1 | 5372 | 36 | 17 | 5386157 | 5489695 |
BC048197 | Gold_partial | 2 | 1133 | 1 | 1070 | 4 | 17 | 4401614 | 4400545 |
BC065551 | Gold_partial | 7 | 3124 | 1 | 2471 | 1 | 17 | 38750600 | 38809267 |
BX647411 | Gold_good | 8 | 2588 | 1 | 2563 | 17 | 17 | 79089371 | 79112001 |