| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK000791 | Gold_bad | 1 | 3312 | 2573 | 740 | 2 | 17 | 49240162 | 49240916 |
| AK000791 | Gold_excellent | 1 | 3312 | 1 | 2572 | 0 | 17 | 49241521 | 49244092 |
| AK021656 | Gold_bad | 1 | 1990 | 432 | 271 | 2 | 17 | 42701094 | 42701365 |
| AK021656 | Gold_excellent | 10 | 1990 | 1 | 1732 | 2 | 17 | 42694562 | 42715010 |
| AK022145 | Gold_bad | 2 | 2400 | 285 | 857 | 9 | 17 | 62137463 | 62139809 |
| AK022145 | Gold_partial | 2 | 2400 | 1128 | 1273 | 5 | 17 | 62135447 | 62136858 |
| AK024138 | Gold_bad | 2 | 2096 | 561 | 978 | 0 | 17 | 63186193 | 63184276 |
| AK024138 | Gold_bad | 2 | 2096 | 1190 | 526 | 6 | 17 | 63189512 | 63172723 |
| AK024138 | Gold_partial | 1 | 2096 | 1 | 567 | 0 | 17 | 63169138 | 63168572 |
| AK025259 | Gold_bad | 3 | 2058 | 611 | 344 | 0 | 17 | 74207400 | 74208054 |
| AK025259 | Gold_partial | 12 | 2058 | 1 | 1691 | 12 | 17 | 74209640 | 74214119 |
| AK026449 | Gold_bad | 1 | 2267 | 1 | 741 | 3 | 17 | 48828913 | 48829653 |
| AK026449 | Gold_excellent | 1 | 2267 | 742 | 1526 | 4 | 17 | 48826605 | 48828130 |
| AK026755 | Gold_bad | 1 | 1903 | 736 | 665 | 4 | 17 | 16120701 | 16121365 |
| AK026755 | Gold_bad | 1 | 1903 | 1395 | 509 | 2 | 17 | 100797 | 100290 |
| AK026755 | Gold_good | 1 | 1903 | 1 | 736 | 5 | 17 | 16124218 | 16124952 |
| AK074512 | Gold_bad | 1 | 1648 | 460 | 563 | 4 | 17 | 40928513 | 40927951 |
| AK074512 | Gold_good | 2 | 1648 | 1 | 1111 | 15 | 17 | 40948439 | 40928819 |
| AK074603 | Gold_bad | 1 | 1550 | 1 | 405 | 1 | 17 | 45621941 | 45621537 |
| AK074603 | Gold_excellent | 1 | 1550 | 402 | 1149 | 3 | 17 | 45624903 | 45623755 |
| AK090481 | Gold_bad | 1 | 4461 | 1 | 694 | 13 | 17 | 79815989 | 79815293 |
| AK090481 | Gold_good | 2 | 4461 | 695 | 3767 | 10 | 17 | 79820029 | 79816193 |
| AK095413 | Gold_bad | 1 | 2380 | 2282 | 99 | 1 | 17 | 7966593 | 7966692 |
| AK095413 | Gold_excellent | 1 | 2380 | 1 | 2285 | 5 | 17 | 7967674 | 7969958 |
| AK097833 | Gold_bad | 1 | 2506 | 348 | 73 | 0 | 17 | 40493697 | 40493770 |
| AK097833 | Gold_excellent | 6 | 2506 | 1 | 2448 | 3 | 17 | 40491978 | 40500357 |
| AK098484 | Gold_bad | 1 | 3138 | 2103 | 573 | 0 | 17 | 62379125 | 62379698 |
| AK098484 | Gold_partial | 3 | 3138 | 1 | 2107 | 3 | 17 | 62378191 | 62381849 |
| AK123075 | Gold_bad | 2 | 2463 | 601 | 162 | 0 | 17 | 40718562 | 40718112 |
| AK123075 | Gold_partial | 10 | 2463 | 2 | 2266 | 4 | 17 | 40719651 | 40714271 |
| AK123712 | Gold_bad | 1 | 2770 | 35 | 79 | 1 | 17 | 75330085 | 75330007 |
| AK123712 | Gold_excellent | 2 | 2770 | 107 | 2664 | 7 | 17 | 75330410 | 75327334 |
| AK130064 | Gold_bad | 3 | 1357 | 259 | 349 | 1 | 17 | 74351785 | 74351278 |
| AK130064 | Gold_excellent | 8 | 1357 | 1 | 1005 | 2 | 17 | 74358396 | 74351150 |
| AK130232 | Gold_bad | 1 | 814 | 564 | 251 | 0 | 17 | 26657287 | 26657538 |
| AK130232 | Gold_excellent | 1 | 814 | 1 | 567 | 0 | 17 | 26657816 | 26658383 |
| AK130239 | Gold_bad | 1 | 1538 | 1 | 470 | 2 | 17 | 79059140 | 79058671 |
| AK130239 | Gold_excellent | 1 | 1538 | 471 | 1067 | 1 | 17 | 79062958 | 79061892 |
| AK130773 | Gold_bad | 2 | 1548 | 901 | 648 | 3 | 17 | 16120649 | 16121328 |
| AK130773 | Gold_good | 1 | 1548 | 1 | 900 | 6 | 17 | 16122033 | 16122931 |
| AK130821 | Gold_bad | 1 | 1359 | 730 | 654 | 3 | 17 | 55384054 | 55383401 |
| AK130821 | Gold_excellent | 2 | 1359 | 24 | 710 | 0 | 17 | 55383400 | 55381540 |
| AL832814 | Gold_bad | 1 | 2827 | 463 | 30 | 0 | 17 | 33737994 | 33737965 |
| AL832814 | Gold_bad | 2 | 2827 | 1 | 451 | 0 | 17 | 33737392 | 33738010 |
| AL832814 | Gold_excellent | 2 | 2827 | 493 | 2335 | 10 | 17 | 33737977 | 33740315 |
| BC006560 | Gold_bad | 1 | 3028 | 2925 | 113 | 0 | 3 | 48934110 | 48933998 |
| BC006560 | Gold_bad | 10 | 3028 | 273 | 2495 | 0 | 17 | 38594223 | 38621706 |
| BC006560 | Gold_partial | 1 | 3028 | 10 | 269 | 0 | 17 | 38622360 | 38622629 |
| BC006571 | Gold_bad | 1 | 3028 | 2916 | 113 | 0 | 3 | 48934110 | 48933998 |
| BC006571 | Gold_bad | 10 | 3028 | 264 | 2495 | 0 | 17 | 38594223 | 38621706 |
| BC006571 | Gold_partial | 1 | 3028 | 1 | 269 | 0 | 17 | 38622360 | 38622629 |
| BC014398 | Gold_bad | 1 | 1179 | 1 | 68 | 1 | 17 | 6528154 | 6528087 |
| BC014398 | Gold_bad | 1 | 1179 | 67 | 344 | 0 | 17 | 6528498 | 6528155 |
| BC014398 | Gold_excellent | 1 | 1179 | 408 | 772 | 2 | 17 | 6529207 | 6528436 |