Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK024362 Gold_bad 4 1870 2 1598 84 19 56898019 56922108
AK057879 Gold_bad 1 1887 1039 366 1 1 91324949 91324584
AK057879 Gold_bad 1 1887 1447 76 3 12 34263950 34263875
AK057879 Gold_bad 11 1887 2 1886 329 19 54637796 54624470
AK097933 Gold_bad 1 2884 1521 49 1 18 55311288 55311239
AK097933 Gold_bad 9 2884 2273 612 63 19 2639250 1960856
AK128681 Gold_bad 36 3613 1 3613 111 19 8874908 8820521
AK128857 Gold_bad 55 5459 2 5458 202 19 8888257 8820521
AK130394 Gold_bad 1 1873 1 1873 154 19 63068348 63070217
BC005965 Gold_bad 2 500 1 488 17 19 38153910 38172845
BC013858 Gold_bad 1 1335 562 168 7 19 40758346 40758514
BC013858 Gold_bad 1 1335 1208 82 2 5 71230815 71230897
BC013858 Gold_bad 1 1335 1281 55 0 20 33864077 33864023
BC019872 Gold_bad 6 1370 1 1369 56 19 17366359 17336601
BC050605 Gold_bad 4 906 1 906 57 19 1832364 1827975
BC052242 Gold_bad 10 1202 1 1202 38 19 11374181 11365736