Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK024362 | Gold_bad | 4 | 1870 | 2 | 1598 | 84 | 19 | 56898019 | 56922108 |
AK057879 | Gold_bad | 1 | 1887 | 1039 | 366 | 1 | 1 | 91324949 | 91324584 |
AK057879 | Gold_bad | 1 | 1887 | 1447 | 76 | 3 | 12 | 34263950 | 34263875 |
AK057879 | Gold_bad | 11 | 1887 | 2 | 1886 | 329 | 19 | 54637796 | 54624470 |
AK097933 | Gold_bad | 1 | 2884 | 1521 | 49 | 1 | 18 | 55311288 | 55311239 |
AK097933 | Gold_bad | 9 | 2884 | 2273 | 612 | 63 | 19 | 2639250 | 1960856 |
AK128681 | Gold_bad | 36 | 3613 | 1 | 3613 | 111 | 19 | 8874908 | 8820521 |
AK128857 | Gold_bad | 55 | 5459 | 2 | 5458 | 202 | 19 | 8888257 | 8820521 |
AK130394 | Gold_bad | 1 | 1873 | 1 | 1873 | 154 | 19 | 63068348 | 63070217 |
BC005965 | Gold_bad | 2 | 500 | 1 | 488 | 17 | 19 | 38153910 | 38172845 |
BC013858 | Gold_bad | 1 | 1335 | 562 | 168 | 7 | 19 | 40758346 | 40758514 |
BC013858 | Gold_bad | 1 | 1335 | 1208 | 82 | 2 | 5 | 71230815 | 71230897 |
BC013858 | Gold_bad | 1 | 1335 | 1281 | 55 | 0 | 20 | 33864077 | 33864023 |
BC019872 | Gold_bad | 6 | 1370 | 1 | 1369 | 56 | 19 | 17366359 | 17336601 |
BC050605 | Gold_bad | 4 | 906 | 1 | 906 | 57 | 19 | 1832364 | 1827975 |
BC052242 | Gold_bad | 10 | 1202 | 1 | 1202 | 38 | 19 | 11374181 | 11365736 |