Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK021435 | Gold_dubious | 1 | 1179 | 1 | 1179 | 34 | 19 | 61480916 | 61479737 |
AK021856 | Gold_dubious | 2 | 1496 | 1 | 1506 | 32 | 19 | 16609917 | 16603702 |
AK022418 | Gold_dubious | 1 | 2005 | 1 | 2005 | 39 | 19 | 19730185 | 19728183 |
AK024407 | Gold_dubious | 2 | 2345 | 41 | 2305 | 40 | 19 | 58388375 | 58359220 |
AK074568 | Gold_dubious | 5 | 1717 | 1 | 675 | 0 | 19 | 61571515 | 61578123 |
AK091021 | Gold_dubious | 2 | 2840 | 1 | 2840 | 46 | 19 | 14161570 | 14166062 |
AK093750 | Gold_dubious | 1 | 2247 | 1 | 2247 | 39 | 19 | 49324447 | 49326693 |
AK096402 | Gold_dubious | 1 | 3128 | 1 | 3128 | 57 | 19 | 23085578 | 23088705 |
AK097291 | Gold_dubious | 1 | 1799 | 2 | 1798 | 30 | 19 | 44673556 | 44675351 |
AK098080 | Gold_dubious | 2 | 2887 | 2 | 2885 | 67 | 19 | 12162794 | 12165786 |
AK098813 | Gold_bad | 1 | 1656 | 1 | 827 | 4 | 19 | 58690138 | 58690963 |
AK098813 | Gold_dubious | 2 | 1656 | 695 | 962 | 39 | 19 | 58608150 | 58689709 |
AK123399 | Gold_dubious | 2 | 2237 | 2 | 2159 | 46 | 19 | 49038051 | 49040235 |
AK126984 | Gold_dubious | 1 | 3553 | 1 | 3553 | 99 | 19 | 46026733 | 46030285 |
AK128845 | Gold_dubious | 5 | 3582 | 1 | 3133 | 54 | 19 | 56543596 | 56540240 |
AK128866 | Gold_bad | 1 | 2163 | 225 | 824 | 22 | 19 | 52605534 | 52604709 |
AK128866 | Gold_dubious | 2 | 2163 | 1 | 1520 | 20 | 19 | 52608705 | 52606928 |
AK130751 | Gold_bad | 1 | 2208 | 1754 | 214 | 1 | 19 | 39389382 | 39389596 |
AK130751 | Gold_bad | 1 | 2208 | 1959 | 250 | 0 | 7 | 127849559 | 127849809 |
AK130751 | Gold_dubious | 1 | 2208 | 1 | 437 | 1 | 19 | 16533639 | 16533203 |
AL832869 | Gold_dubious | 2 | 2865 | 1 | 1529 | 0 | 19 | 12600148 | 12601684 |
BC014144 | Gold_dubious | 9 | 1891 | 1 | 1891 | 38 | 19 | 11452796 | 11424304 |
BC020816 | Gold_dubious | 1 | 708 | 1 | 708 | 12 | 19 | 16324993 | 16324285 |
BC035367 | Gold_dubious | 9 | 852 | 1 | 852 | 13 | 19 | 57082908 | 57050869 |
BC035885 | Gold_dubious | 1 | 962 | 12 | 959 | 17 | 19 | 60154814 | 60155773 |
BC036591 | Gold_dubious | 1 | 2071 | 5 | 2071 | 36 | 19 | 16514557 | 16516625 |
BC039403 | Gold_dubious | 1 | 629 | 1 | 629 | 12 | 19 | 21266428 | 21265803 |
BC041615 | Gold_dubious | 4 | 637 | 1 | 636 | 10 | 19 | 62885225 | 62961518 |
BC041949 | Gold_dubious | 6 | 1747 | 1 | 1747 | 32 | 19 | 41514460 | 41502460 |
BC047520 | Gold_dubious | 4 | 989 | 1 | 988 | 15 | 19 | 13703576 | 13708840 |
BC054012 | Gold_dubious | 1 | 240 | 4 | 133 | 0 | 19 | 40723600 | 40723468 |
BC061910 | Gold_dubious | 1 | 975 | 1 | 975 | 15 | 19 | 58636995 | 58637970 |
BX647933 | Gold_dubious | 5 | 603 | 1 | 603 | 15 | 19 | 18981780 | 18973438 |