Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK026952 | Gold_bad | 6 | 2371 | 1 | 853 | 2 | 19 | 18312453 | 18335512 |
AK026952 | Gold_excellent | 8 | 2371 | 847 | 1525 | 2 | 19 | 18513658 | 18503573 |
AK123277 | Gold_bad | 1 | 2882 | 1 | 1228 | 8 | 19 | 51201628 | 51202860 |
AK123277 | Gold_excellent | 1 | 2882 | 1228 | 1655 | 3 | 19 | 51128523 | 51126870 |
AL133622 | Gold_bad | 1 | 3979 | 1 | 59 | 0 | 19 | 5082159 | 5082101 |
AL133622 | Gold_excellent | 12 | 3979 | 60 | 3920 | 6 | 19 | 5082229 | 5104606 |
BC009034 | Gold_bad | 1 | 1059 | 43 | 40 | 0 | 19 | 19479754 | 19479715 |
BC009034 | Gold_partial | 1 | 1059 | 74 | 998 | 6 | 19 | 19479737 | 19480734 |
BC015979 | Gold_bad | 1 | 709 | 521 | 163 | 2 | 19 | 51026284 | 51026446 |
BC015979 | Gold_partial | 1 | 709 | 1 | 513 | 7 | 19 | 51026552 | 51026033 |