Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK026952 Gold_bad 6 2371 1 853 2 19 18312453 18335512
AK026952 Gold_excellent 8 2371 847 1525 2 19 18513658 18503573
AK123277 Gold_bad 1 2882 1 1228 8 19 51201628 51202860
AK123277 Gold_excellent 1 2882 1228 1655 3 19 51128523 51126870
AL133622 Gold_bad 1 3979 1 59 0 19 5082159 5082101
AL133622 Gold_excellent 12 3979 60 3920 6 19 5082229 5104606
BC009034 Gold_bad 1 1059 43 40 0 19 19479754 19479715
BC009034 Gold_partial 1 1059 74 998 6 19 19479737 19480734
BC015979 Gold_bad 1 709 521 163 2 19 51026284 51026446
BC015979 Gold_partial 1 709 1 513 7 19 51026552 51026033