| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AB033019 | Gold_partial | 17 | 7118 | 5 | 6811 | 11 | 19 | 287175 | 252444 |
| AB067468 | Gold_partial | 6 | 6309 | 1 | 6053 | 26 | 19 | 4464705 | 4453210 |
| AK001073 | Gold_bad | 3 | 1693 | 158 | 367 | 0 | 19 | 44558958 | 44560176 |
| AK001073 | Gold_partial | 4 | 1693 | 521 | 1041 | 3 | 19 | 44539299 | 44558975 |
| AK001357 | Gold_partial | 2 | 2279 | 1 | 1846 | 13 | 19 | 57579035 | 57580843 |
| AK026614 | Gold_bad | 5 | 1917 | 1 | 437 | 0 | 3 | 199003685 | 199009309 |
| AK026614 | Gold_partial | 11 | 1917 | 474 | 1444 | 1 | 19 | 14391122 | 14380633 |
| AK074282 | Gold_partial | 1 | 2028 | 22 | 2007 | 5 | 19 | 52261293 | 52259289 |
| AK074601 | Gold_bad | 1 | 2136 | 1437 | 105 | 4 | 19 | 53823971 | 53824079 |
| AK074601 | Gold_bad | 3 | 2136 | 1538 | 442 | 1 | 19 | 53823081 | 53824018 |
| AK074601 | Gold_partial | 3 | 2136 | 1 | 1441 | 0 | 19 | 53814603 | 53825278 |
| AK090919 | Gold_bad | 1 | 2052 | 1664 | 224 | 1 | 19 | 50347395 | 50347172 |
| AK090919 | Gold_partial | 2 | 2052 | 1 | 1669 | 3 | 19 | 50348869 | 50346964 |
| AK091070 | Gold_partial | 2 | 2440 | 1 | 2091 | 4 | 19 | 35738717 | 35740805 |
| AK092566 | Gold_partial | 5 | 2724 | 1 | 2290 | 15 | 19 | 57564988 | 57580856 |
| AK124241 | Gold_bad | 1 | 2142 | 1771 | 372 | 0 | 19 | 53247337 | 53246966 |
| AK124241 | Gold_partial | 5 | 2142 | 1 | 1299 | 0 | 19 | 53268120 | 53248057 |
| AK127573 | Gold_bad | 1 | 3070 | 3024 | 46 | 1 | 1 | 10257148 | 10257103 |
| AK127573 | Gold_partial | 2 | 3070 | 1 | 2833 | 20 | 19 | 2275425 | 2279027 |
| AK127809 | Gold_partial | 13 | 2090 | 1 | 2067 | 12 | 19 | 14554896 | 14582969 |
| AK129979 | Gold_bad | 1 | 1628 | 161 | 50 | 1 | 19 | 16526637 | 16526588 |
| AK129979 | Gold_partial | 1 | 1628 | 317 | 1311 | 14 | 19 | 23741265 | 23742580 |
| AK130636 | Gold_bad | 2 | 1488 | 1247 | 158 | 0 | 19 | 60469458 | 60469153 |
| AK130636 | Gold_partial | 6 | 1488 | 1 | 1120 | 13 | 19 | 60483307 | 60465633 |
| AL050168 | Gold_partial | 2 | 1552 | 1 | 1484 | 13 | 19 | 18453925 | 18435142 |
| AL050194 | Gold_partial | 1 | 386 | 1 | 379 | 2 | 19 | 634006 | 634385 |
| BC000090 | Gold_bad | 3 | 2073 | 1453 | 630 | 1 | 19 | 2378536 | 2377563 |
| BC000090 | Gold_partial | 7 | 2073 | 10 | 1358 | 3 | 19 | 4133541 | 4125106 |
| BC001198 | Gold_bad | 4 | 2289 | 1 | 599 | 2 | 20 | 35174431 | 35216685 |
| BC001198 | Gold_partial | 5 | 2289 | 628 | 1662 | 0 | 19 | 46636153 | 46629064 |
| BC004934 | Gold_bad | 1 | 2204 | 1816 | 389 | 0 | 2 | 74416561 | 74416950 |
| BC004934 | Gold_partial | 11 | 2204 | 1 | 1752 | 0 | 19 | 5656823 | 5642845 |
| BC008338 | Gold_bad | 1 | 1957 | 1 | 83 | 0 | X | 138905898 | 138905816 |
| BC008338 | Gold_partial | 8 | 1957 | 181 | 1777 | 7 | 19 | 3705798 | 3701817 |
| BC009034 | Gold_bad | 1 | 1059 | 43 | 40 | 0 | 19 | 19479754 | 19479715 |
| BC009034 | Gold_partial | 1 | 1059 | 74 | 998 | 6 | 19 | 19479737 | 19480734 |
| BC009473 | Gold_partial | 1 | 207 | 2 | 175 | 1 | 19 | 6375804 | 6375630 |
| BC011810 | Gold_partial | 3 | 3228 | 28 | 3181 | 7 | 19 | 63064153 | 63067925 |
| BC014403 | Gold_bad | 1 | 3579 | 2838 | 724 | 2 | 11 | 65460385 | 65459662 |
| BC014403 | Gold_bad | 6 | 3579 | 1781 | 1019 | 0 | 20 | 34582154 | 34587726 |
| BC014403 | Gold_partial | 7 | 3579 | 1 | 1674 | 6 | 19 | 51979647 | 51969980 |
| BC014786 | Gold_partial | 7 | 875 | 37 | 825 | 5 | 19 | 44000052 | 43997902 |
| BC015979 | Gold_bad | 1 | 709 | 521 | 163 | 2 | 19 | 51026284 | 51026446 |
| BC015979 | Gold_partial | 1 | 709 | 1 | 513 | 7 | 19 | 51026552 | 51026033 |
| BC018887 | Gold_bad | 3 | 1101 | 1 | 472 | 0 | 6 | 33304310 | 33305116 |
| BC018887 | Gold_partial | 1 | 1101 | 486 | 616 | 0 | 19 | 10288510 | 10287886 |
| BC019585 | Gold_partial | 1 | 1083 | 13 | 1071 | 0 | 19 | 1328358 | 1329428 |
| BC020346 | Gold_partial | 11 | 2044 | 1 | 2019 | 9 | 19 | 50528532 | 50545485 |
| BC020462 | Gold_partial | 4 | 693 | 22 | 669 | 0 | 19 | 59396853 | 59403327 |
| BC020473 | Gold_partial | 11 | 1498 | 19 | 1480 | 3 | 19 | 11180665 | 11170971 |
| BC022568 | Gold_partial | 2 | 2267 | 1 | 2013 | 19 | 19 | 2594849 | 2592837 |
| BC025259 | Gold_bad | 1 | 993 | 676 | 318 | 0 | 2 | 163367700 | 163367371 |
| BC025259 | Gold_partial | 2 | 993 | 1 | 608 | 0 | 19 | 54063669 | 54062606 |
| BC032577 | Gold_partial | 6 | 2568 | 45 | 2535 | 4 | 19 | 41601339 | 41574703 |
| BC035830 | Gold_partial | 6 | 716 | 24 | 701 | 0 | 19 | 63590483 | 63597979 |
| BC039001 | Gold_partial | 2 | 741 | 1 | 729 | 1 | 19 | 19905613 | 19963946 |
| BC040420 | Gold_partial | 2 | 1139 | 45 | 1095 | 0 | 19 | 7896885 | 7895383 |
| BC040709 | Gold_partial | 1 | 596 | 25 | 550 | 2 | 19 | 58606525 | 58607074 |
| BC041686 | Gold_partial | 2 | 2145 | 4 | 2015 | 8 | 19 | 2594851 | 2592837 |
| BC046240 | Gold_partial | 12 | 2754 | 1 | 2492 | 0 | 19 | 10883879 | 10894745 |
| BC050595 | Gold_partial | 5 | 1478 | 49 | 1439 | 1 | 19 | 56050008 | 56055832 |
| BC052571 | Gold_bad | 1 | 3371 | 2561 | 811 | 2 | 2 | 28997628 | 28998438 |
| BC052571 | Gold_bad | 5 | 3371 | 1916 | 636 | 0 | X | 46557182 | 46564498 |
| BC052571 | Gold_partial | 2 | 3371 | 1 | 1856 | 9 | 19 | 18253418 | 18251570 |
| BC052960 | Gold_partial | 2 | 1559 | 1 | 1536 | 18 | 19 | 16516625 | 16514434 |
| BC053511 | Gold_bad | 3 | 3254 | 2186 | 1069 | 4 | 17 | 66539759 | 66537558 |
| BC053511 | Gold_partial | 3 | 3254 | 1 | 2114 | 0 | 19 | 62817431 | 62825103 |
| BC061902 | Gold_partial | 1 | 520 | 1 | 468 | 1 | 19 | 1941369 | 1940902 |
| BC064588 | Gold_partial | 3 | 1114 | 15 | 1100 | 2 | 19 | 8456662 | 8459994 |
| BX647356 | Gold_bad | 6 | 4328 | 13 | 2048 | 2 | 12 | 54677321 | 54685340 |
| BX647356 | Gold_partial | 6 | 4328 | 2081 | 2228 | 10 | 19 | 8375322 | 8361283 |
| BX648432 | Gold_bad | 5 | 5998 | 3191 | 2805 | 4 | 3 | 172659164 | 172639544 |
| BX648432 | Gold_partial | 5 | 5998 | 1 | 3125 | 3 | 19 | 39437331 | 39538311 |