Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK092753 | Gold_bad | 1 | 1820 | 1 | 82 | 0 | 2 | 89087202 | 89087283 |
AK092753 | Gold_dubious | 1 | 1820 | 1454 | 367 | 5 | 2 | 89062396 | 89062030 |
AK092815 | Gold_bad | 4 | 1908 | 1 | 1908 | 68 | 2 | 89378788 | 89058824 |
AK096938 | Gold_dubious | 4 | 944 | 1 | 944 | 20 | 2 | 89424086 | 89058824 |
AK097042 | Gold_dubious | 2 | 1810 | 1 | 601 | 0 | 2 | 89378788 | 89058824 |
AK097353 | Gold_bad | 6 | 929 | 1 | 929 | 54 | 2 | 89470400 | 89058824 |
AK126003 | Gold_excellent | 1 | 3227 | 1 | 3227 | 5 | 2 | 89009889 | 89013116 |
AK128524 | Gold_dubious | 4 | 4067 | 1 | 4067 | 99 | 2 | 89344769 | 89058824 |
AK128525 | Gold_bad | 5 | 3396 | 1 | 3188 | 134 | 2 | 89287362 | 89060281 |
AK128638 | Gold_bad | 2 | 3450 | 1 | 389 | 13 | 2 | 89087207 | 89087814 |
AK128638 | Gold_good | 2 | 3450 | 392 | 3059 | 35 | 2 | 89063214 | 89060182 |
AK129779 | Gold_bad | 1 | 946 | 1 | 80 | 2 | 2 | 89087203 | 89087282 |
AK129779 | Gold_partial | 1 | 946 | 430 | 517 | 0 | 2 | 89059340 | 89058824 |
AK129807 | Gold_dubious | 4 | 938 | 1 | 938 | 16 | 2 | 89344768 | 89058824 |
AK129817 | Gold_good | 4 | 928 | 1 | 928 | 8 | 2 | 89212121 | 89058824 |
BC005332 | Gold_good | 4 | 925 | 1 | 925 | 8 | 2 | 89301991 | 89058824 |
BC016380 | Gold_good | 5 | 937 | 5 | 936 | 14 | 2 | 89344768 | 89058823 |
BC017870 | Gold_bad | 2 | 949 | 1 | 394 | 4 | 2 | 89087202 | 89087815 |
BC017870 | Gold_good | 2 | 949 | 396 | 550 | 1 | 2 | 89063576 | 89058826 |
BC018761 | Gold_bad | 2 | 922 | 1 | 368 | 3 | 2 | 89087227 | 89087813 |
BC018761 | Gold_partial | 1 | 922 | 406 | 517 | 0 | 2 | 89059340 | 89058823 |
BC022362 | Gold_good | 4 | 943 | 1 | 942 | 5 | 2 | 89447223 | 89058826 |
BC029444 | Gold_dubious | 4 | 926 | 1 | 925 | 16 | 2 | 89248127 | 89058824 |
BC030813 | Gold_good | 4 | 932 | 1 | 932 | 12 | 2 | 89287363 | 89058824 |
BC030814 | Gold_good | 4 | 943 | 1 | 943 | 6 | 2 | 89424086 | 89058825 |
BC032451 | Gold_good | 4 | 918 | 1 | 918 | 10 | 2 | 89344748 | 89058823 |
BC034141 | Gold_excellent | 4 | 932 | 1 | 931 | 3 | 2 | 89212123 | 89058823 |
BC034142 | Gold_good | 4 | 948 | 1 | 947 | 4 | 2 | 89424086 | 89058824 |
BC034146 | Gold_bad | 4 | 931 | 1 | 930 | 34 | 2 | 89149463 | 89058824 |
BC041353 | Gold_excellent | 1 | 2473 | 1 | 2473 | 4 | 2 | 89151237 | 89153709 |
BC050997 | Gold_dubious | 4 | 908 | 1 | 908 | 17 | 2 | 89248106 | 89058821 |
BC056256 | Gold_good | 4 | 931 | 5 | 931 | 8 | 2 | 89194573 | 89058823 |
BC062704 | Gold_dubious | 4 | 938 | 4 | 937 | 18 | 2 | 89344768 | 89058825 |
BC062732 | Gold_dubious | 4 | 876 | 1 | 875 | 18 | 2 | 89212123 | 89058824 |
BC063599 | Gold_good | 4 | 928 | 1 | 928 | 12 | 2 | 89378772 | 89058823 |