Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK092753 Gold_bad 1 1820 1 82 0 2 89087202 89087283
AK092753 Gold_dubious 1 1820 1454 367 5 2 89062396 89062030
AK092815 Gold_bad 4 1908 1 1908 68 2 89378788 89058824
AK096938 Gold_dubious 4 944 1 944 20 2 89424086 89058824
AK097042 Gold_dubious 2 1810 1 601 0 2 89378788 89058824
AK097353 Gold_bad 6 929 1 929 54 2 89470400 89058824
AK126003 Gold_excellent 1 3227 1 3227 5 2 89009889 89013116
AK128524 Gold_dubious 4 4067 1 4067 99 2 89344769 89058824
AK128525 Gold_bad 5 3396 1 3188 134 2 89287362 89060281
AK128638 Gold_bad 2 3450 1 389 13 2 89087207 89087814
AK128638 Gold_good 2 3450 392 3059 35 2 89063214 89060182
AK129779 Gold_bad 1 946 1 80 2 2 89087203 89087282
AK129779 Gold_partial 1 946 430 517 0 2 89059340 89058824
AK129807 Gold_dubious 4 938 1 938 16 2 89344768 89058824
AK129817 Gold_good 4 928 1 928 8 2 89212121 89058824
BC005332 Gold_good 4 925 1 925 8 2 89301991 89058824
BC016380 Gold_good 5 937 5 936 14 2 89344768 89058823
BC017870 Gold_bad 2 949 1 394 4 2 89087202 89087815
BC017870 Gold_good 2 949 396 550 1 2 89063576 89058826
BC018761 Gold_bad 2 922 1 368 3 2 89087227 89087813
BC018761 Gold_partial 1 922 406 517 0 2 89059340 89058823
BC022362 Gold_good 4 943 1 942 5 2 89447223 89058826
BC029444 Gold_dubious 4 926 1 925 16 2 89248127 89058824
BC030813 Gold_good 4 932 1 932 12 2 89287363 89058824
BC030814 Gold_good 4 943 1 943 6 2 89424086 89058825
BC032451 Gold_good 4 918 1 918 10 2 89344748 89058823
BC034141 Gold_excellent 4 932 1 931 3 2 89212123 89058823
BC034142 Gold_good 4 948 1 947 4 2 89424086 89058824
BC034146 Gold_bad 4 931 1 930 34 2 89149463 89058824
BC041353 Gold_excellent 1 2473 1 2473 4 2 89151237 89153709
BC050997 Gold_dubious 4 908 1 908 17 2 89248106 89058821
BC056256 Gold_good 4 931 5 931 8 2 89194573 89058823
BC062704 Gold_dubious 4 938 4 937 18 2 89344768 89058825
BC062732 Gold_dubious 4 876 1 875 18 2 89212123 89058824
BC063599 Gold_good 4 928 1 928 12 2 89378772 89058823