Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK000586 | Gold_dubious | 8 | 1544 | 3 | 1542 | 45 | 20 | 55733779 | 55779360 |
AK001840 | Gold_dubious | 2 | 1691 | 1 | 1691 | 43 | 20 | 40294818 | 40298242 |
AK027173 | Gold_dubious | 2 | 1794 | 1 | 1573 | 30 | 20 | 3987309 | 3964857 |
AK027893 | Gold_dubious | 3 | 1346 | 1 | 308 | 0 | 20 | 32046937 | 32031373 |
AK056260 | Gold_dubious | 1 | 1984 | 1 | 1984 | 36 | 20 | 3844296 | 3846281 |
AK096307 | Gold_dubious | 3 | 1888 | 1 | 850 | 2 | 20 | 32047479 | 32031373 |
AK097059 | Gold_dubious | 4 | 1987 | 1 | 385 | 0 | 20 | 32046927 | 32031373 |
AK097528 | Gold_bad | 2 | 2995 | 1328 | 1291 | 37 | 20 | 55776144 | 55792938 |
AK097528 | Gold_dubious | 2 | 2995 | 1 | 1839 | 12 | 20 | 55782730 | 55784803 |
AK128103 | Gold_dubious | 1 | 3211 | 2850 | 362 | 1 | 20 | 47208892 | 47208531 |
AL832097 | Gold_dubious | 1 | 2769 | 1 | 1605 | 1 | 20 | 61838114 | 61839718 |
BC000628 | Gold_dubious | 3 | 1332 | 1 | 294 | 0 | 20 | 32046923 | 32031373 |
BC003675 | Gold_dubious | 2 | 220 | 1 | 203 | 5 | 20 | 44861469 | 44859771 |
BC047440 | Gold_dubious | 3 | 1457 | 1 | 422 | 1 | 20 | 32047051 | 32031373 |
BC056916 | Gold_bad | 1 | 1644 | 1133 | 33 | 0 | 11 | 68749400 | 68749368 |
BC056916 | Gold_dubious | 1 | 1644 | 1268 | 36 | 1 | 20 | 5635541 | 5635577 |
BX648024 | Gold_dubious | 17 | 3712 | 1 | 3711 | 66 | 20 | 34885966 | 34861941 |