| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK025231 | Gold_partial | 2 | 2361 | 33 | 2329 | 24 | 22 | 21554563 | 21556899 |
| AK026408 | Gold_good | 3 | 966 | 1 | 966 | 7 | 22 | 20989290 | 21000229 |
| AK057065 | Gold_bad | 6 | 2216 | 1 | 2207 | 152 | 22 | 21335315 | 21573524 |
| AK057174 | Gold_dubious | 3 | 2423 | 1 | 2423 | 65 | 22 | 20777701 | 21562565 |
| AK058037 | Gold_bad | 1 | 2013 | 1 | 248 | 1 | 4 | 57886964 | 57886717 |
| AK058037 | Gold_bad | 7 | 2013 | 249 | 997 | 30 | 14 | 104849768 | 104180033 |
| AK058037 | Gold_dubious | 4 | 2013 | 1258 | 756 | 18 | 22 | 21387932 | 21568169 |
| AK090629 | Gold_excellent | 11 | 1830 | 1 | 1830 | 3 | 22 | 20977077 | 21001757 |
| AK093108 | Gold_excellent | 2 | 2140 | 6 | 2145 | 2 | 22 | 21199167 | 21192617 |
| AK094432 | Gold_excellent | 1 | 2596 | 1 | 2596 | 3 | 22 | 20946264 | 20943668 |
| AK094832 | Gold_good | 1 | 1890 | 1 | 1890 | 22 | 22 | 20955489 | 20953601 |
| AK097035 | Gold_bad | 2 | 2168 | 103 | 2036 | 82 | 22 | 21560797 | 21562844 |
| AK097040 | Gold_bad | 4 | 1954 | 401 | 1554 | 137 | 22 | 21566355 | 21573524 |
| AK097328 | Gold_bad | 3 | 1912 | 639 | 1274 | 69 | 22 | 21566593 | 21573524 |
| AK097608 | Gold_excellent | 4 | 2475 | 1 | 2475 | 4 | 22 | 21188059 | 21166579 |
| AK098158 | Gold_bad | 1 | 2081 | 8 | 81 | 2 | 22 | 21331463 | 21331544 |
| AK098158 | Gold_bad | 3 | 2081 | 927 | 1155 | 70 | 22 | 21566932 | 21573522 |
| AK125585 | Gold_bad | 3 | 2198 | 1 | 2198 | 72 | 22 | 21059756 | 21573522 |
| AK125629 | Gold_partial | 3 | 2108 | 1 | 1536 | 16 | 22 | 21547455 | 21573524 |
| AK127411 | Gold_bad | 8 | 2245 | 1 | 2120 | 79 | 22 | 21547455 | 21568169 |
| AK129585 | Gold_bad | 4 | 885 | 1 | 842 | 47 | 22 | 21425745 | 21568166 |
| AK129603 | Gold_bad | 4 | 885 | 1 | 885 | 50 | 22 | 21489831 | 21568166 |
| AK129783 | Gold_excellent | 5 | 2048 | 16 | 2048 | 2 | 22 | 21224577 | 21214682 |
| AK130415 | Gold_bad | 6 | 953 | 2 | 952 | 50 | 22 | 21344745 | 21562565 |
| AK130461 | Gold_bad | 5 | 887 | 1 | 854 | 32 | 22 | 21459535 | 21568169 |
| AK130519 | Gold_bad | 2 | 1230 | 912 | 319 | 1 | 4 | 71214461 | 71217792 |
| AK130519 | Gold_partial | 6 | 1230 | 1 | 897 | 11 | 22 | 21425743 | 21568172 |
| AL713800 | Gold_bad | 2 | 1486 | 1 | 1486 | 47 | 22 | 21571967 | 21573527 |
| BC007782 | Gold_bad | 4 | 1126 | 1 | 1126 | 51 | 22 | 21379443 | 21562837 |
| BC012159 | Gold_excellent | 2 | 877 | 1 | 877 | 1 | 22 | 21554573 | 21573522 |
| BC012876 | Gold_dubious | 4 | 876 | 17 | 873 | 18 | 22 | 21088678 | 21562566 |
| BC014074 | Gold_excellent | 6 | 2049 | 1 | 2049 | 0 | 22 | 21225976 | 21214682 |
| BC015833 | Gold_dubious | 4 | 882 | 5 | 882 | 18 | 22 | 21364952 | 21568167 |
| BC017922 | Gold_good | 2 | 641 | 1 | 641 | 5 | 22 | 20923754 | 20924480 |
| BC018749 | Gold_good | 5 | 871 | 1 | 871 | 6 | 22 | 21331466 | 21573524 |
| BC020233 | Gold_excellent | 5 | 885 | 1 | 885 | 2 | 22 | 21088669 | 21568167 |
| BC020236 | Gold_good | 4 | 894 | 1 | 894 | 7 | 22 | 21538240 | 21573524 |
| BC022008 | Gold_excellent | 5 | 2830 | 12 | 2830 | 5 | 22 | 21226322 | 21214678 |
| BC022098 | Gold_good | 5 | 882 | 1 | 882 | 9 | 22 | 21088671 | 21573523 |
| BC022822 | Gold_excellent | 4 | 890 | 1 | 890 | 3 | 22 | 21022101 | 21573523 |
| BC022823 | Gold_good | 5 | 876 | 1 | 876 | 6 | 22 | 21353750 | 21573523 |
| BC023973 | Gold_good | 2 | 559 | 1 | 559 | 4 | 22 | 20874730 | 20875413 |
| BC028090 | Gold_good | 4 | 874 | 12 | 871 | 4 | 22 | 21379430 | 21573524 |
| BC030983 | Gold_good | 4 | 887 | 1 | 886 | 11 | 22 | 21459538 | 21573522 |
| BC030984 | Gold_good | 5 | 896 | 1 | 895 | 13 | 22 | 21036651 | 21573524 |
| BC032452 | Gold_dubious | 4 | 865 | 1 | 865 | 13 | 22 | 21478808 | 21573525 |
| BC033102 | Gold_excellent | 4 | 875 | 1 | 875 | 1 | 22 | 21489839 | 21562565 |
| BC033148 | Gold_bad | 1 | 1917 | 1673 | 245 | 1 | 12 | 6511137 | 6511382 |
| BC033148 | Gold_excellent | 5 | 1917 | 1 | 1672 | 1 | 22 | 20977068 | 20987199 |
| BC035376 | Gold_good | 1 | 644 | 2 | 642 | 3 | 22 | 21164414 | 21163773 |
| BC039731 | Gold_excellent | 5 | 2720 | 1 | 2720 | 10 | 22 | 21226212 | 21214682 |
| BC040020 | Gold_good | 5 | 3959 | 1 | 3959 | 27 | 22 | 21187605 | 21163773 |
| BC040190 | Gold_excellent | 3 | 3109 | 1 | 3109 | 8 | 22 | 21226304 | 21233560 |
| BC042370 | Gold_good | 1 | 956 | 1 | 956 | 4 | 22 | 21164283 | 21163328 |
| BC053901 | Gold_good | 2 | 2131 | 1 | 2131 | 17 | 22 | 21199152 | 21192617 |
| BC054883 | Gold_bad | 4 | 877 | 5 | 877 | 36 | 22 | 21379418 | 21573517 |
| BC054893 | Gold_bad | 5 | 997 | 5 | 1004 | 39 | 22 | 21054912 | 21573518 |
| BC062711 | Gold_dubious | 6 | 887 | 6 | 885 | 14 | 22 | 21425743 | 21562562 |
| BC064491 | Gold_dubious | 4 | 873 | 1 | 873 | 19 | 22 | 21364960 | 21562564 |
| BX538217 | Gold_dubious | 5 | 3657 | 1 | 3636 | 56 | 22 | 20966485 | 20962867 |
| BX641141 | Gold_good | 5 | 3106 | 2 | 3105 | 15 | 22 | 20977087 | 20988611 |