Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK025048 | Gold_dubious | 4 | 2475 | 2 | 2490 | 61 | 3 | 42048436 | 42028609 |
AK027224 | Gold_dubious | 11 | 1978 | 1 | 1978 | 30 | 3 | 199003414 | 198942569 |
AK092495 | Gold_dubious | 8 | 1827 | 918 | 910 | 3 | 3 | 66226697 | 66361575 |
AK094248 | Gold_dubious | 7 | 2318 | 1 | 2318 | 37 | 3 | 49425709 | 49419392 |
AK125174 | Gold_dubious | 1 | 3129 | 1 | 3129 | 57 | 3 | 196742085 | 196745213 |
AK130023 | Gold_bad | 1 | 2022 | 1289 | 496 | 5 | 3 | 53183770 | 53184266 |
AK130023 | Gold_bad | 1 | 2022 | 1779 | 244 | 0 | 3 | 53183739 | 53184002 |
AK130023 | Gold_dubious | 3 | 2022 | 64 | 1157 | 41 | 3 | 53181854 | 53188008 |
AK130393 | Gold_dubious | 1 | 1677 | 1 | 1677 | 26 | 3 | 198870843 | 198872519 |
AL137371 | Gold_dubious | 1 | 509 | 1 | 509 | 9 | 3 | 197517830 | 197518337 |
BC002826 | Gold_dubious | 7 | 2074 | 1 | 2074 | 40 | 3 | 49003852 | 49012391 |
BC012362 | Gold_dubious | 6 | 1913 | 1 | 1910 | 38 | 3 | 154200968 | 154234099 |
BC018943 | Gold_dubious | 1 | 478 | 1 | 478 | 12 | 3 | 51986584 | 51986119 |
BC030754 | Gold_dubious | 1 | 1084 | 5 | 1084 | 17 | 3 | 114754168 | 114753077 |
BC040680 | Gold_dubious | 1 | 4965 | 5 | 4965 | 112 | 3 | 126860228 | 126855266 |
BC040733 | Gold_dubious | 2 | 1224 | 2 | 1223 | 33 | 3 | 198697537 | 198699558 |
BC044310 | Gold_dubious | 8 | 1973 | 1 | 1973 | 40 | 3 | 198687262 | 198699407 |
BX537742 | Gold_dubious | 1 | 2156 | 1 | 2156 | 47 | 3 | 133717109 | 133719264 |
BX649049 | Gold_dubious | 1 | 342 | 10 | 333 | 5 | 3 | 127382720 | 127382388 |