Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK025048 Gold_dubious 4 2475 2 2490 61 3 42048436 42028609
AK027224 Gold_dubious 11 1978 1 1978 30 3 199003414 198942569
AK092495 Gold_dubious 8 1827 918 910 3 3 66226697 66361575
AK094248 Gold_dubious 7 2318 1 2318 37 3 49425709 49419392
AK125174 Gold_dubious 1 3129 1 3129 57 3 196742085 196745213
AK130023 Gold_bad 1 2022 1289 496 5 3 53183770 53184266
AK130023 Gold_bad 1 2022 1779 244 0 3 53183739 53184002
AK130023 Gold_dubious 3 2022 64 1157 41 3 53181854 53188008
AK130393 Gold_dubious 1 1677 1 1677 26 3 198870843 198872519
AL137371 Gold_dubious 1 509 1 509 9 3 197517830 197518337
BC002826 Gold_dubious 7 2074 1 2074 40 3 49003852 49012391
BC012362 Gold_dubious 6 1913 1 1910 38 3 154200968 154234099
BC018943 Gold_dubious 1 478 1 478 12 3 51986584 51986119
BC030754 Gold_dubious 1 1084 5 1084 17 3 114754168 114753077
BC040680 Gold_dubious 1 4965 5 4965 112 3 126860228 126855266
BC040733 Gold_dubious 2 1224 2 1223 33 3 198697537 198699558
BC044310 Gold_dubious 8 1973 1 1973 40 3 198687262 198699407
BX537742 Gold_dubious 1 2156 1 2156 47 3 133717109 133719264
BX649049 Gold_dubious 1 342 10 333 5 3 127382720 127382388