Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AB051544 | Gold_bad | 1 | 4945 | 1 | 86 | 0 | 3 | 9450668 | 9450583 |
AB051544 | Gold_excellent | 19 | 4945 | 85 | 4861 | 2 | 3 | 9450677 | 9493143 |
AK025047 | Gold_bad | 1 | 2673 | 14 | 868 | 11 | 3 | 114640800 | 114639933 |
AK025047 | Gold_good | 1 | 2673 | 882 | 1807 | 6 | 3 | 114629425 | 114631242 |
AK057855 | Gold_bad | 1 | 1777 | 1688 | 90 | 0 | 3 | 44120283 | 44120372 |
AK057855 | Gold_partial | 1 | 1777 | 1 | 1668 | 2 | 3 | 44119571 | 44117904 |
AK124389 | Gold_bad | 1 | 1965 | 1798 | 168 | 0 | 3 | 197986316 | 197986149 |
AK124389 | Gold_excellent | 9 | 1965 | 1 | 1810 | 1 | 3 | 197939352 | 197984636 |
AL080232 | Gold_bad | 1 | 3052 | 1 | 1056 | 4 | 3 | 189283552 | 189284606 |
AL080232 | Gold_bad | 1 | 3052 | 1105 | 33 | 0 | 3 | 189284606 | 189284574 |
AL080232 | Gold_partial | 1 | 3052 | 1133 | 1919 | 13 | 3 | 189284602 | 189286519 |
AL162034 | Gold_bad | 1 | 751 | 1 | 58 | 0 | 3 | 48981246 | 48981303 |
AL162034 | Gold_excellent | 1 | 751 | 59 | 688 | 1 | 3 | 48981986 | 48981300 |
AL834214 | Gold_bad | 2 | 1570 | 11 | 329 | 2 | 3 | 151698752 | 151705712 |
AL834214 | Gold_excellent | 9 | 1570 | 340 | 1231 | 0 | 3 | 151724454 | 151698583 |
BC019853 | Gold_bad | 1 | 892 | 1 | 36 | 0 | 3 | 10343600 | 10343636 |
BC019853 | Gold_excellent | 1 | 892 | 31 | 862 | 1 | 3 | 10343611 | 10342751 |
BC043393 | Gold_bad | 1 | 3903 | 17 | 45 | 0 | 3 | 184800956 | 184800912 |
BC043393 | Gold_excellent | 17 | 3903 | 58 | 3846 | 0 | 3 | 184800945 | 184850773 |
BX647128 | Gold_bad | 1 | 4481 | 40 | 191 | 1 | 3 | 186529697 | 186529888 |
BX647128 | Gold_excellent | 2 | 4481 | 223 | 4259 | 2 | 3 | 186533421 | 186526299 |