| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK000266 | Gold_excellent | 9 | 1974 | 1 | 1974 | 0 | 3 | 49053588 | 49026204 |
| AK000581 | Gold_bad | 1 | 2581 | 2523 | 59 | 0 | 3 | 41964162 | 41964104 |
| AK000581 | Gold_good | 21 | 2581 | 2 | 2509 | 11 | 3 | 41964162 | 41791541 |
| AK001564 | Gold_excellent | 8 | 2944 | 1 | 2944 | 9 | 3 | 5138977 | 5197599 |
| AK025119 | Gold_good | 2 | 1971 | 1 | 1971 | 9 | 3 | 145030156 | 145032112 |
| AK056320 | Gold_good | 5 | 1912 | 1 | 1912 | 16 | 3 | 101441292 | 101496063 |
| AK074225 | Gold_bad | 1 | 2175 | 2056 | 120 | 0 | 3 | 67581611 | 67581491 |
| AK074225 | Gold_excellent | 1 | 2175 | 1 | 2061 | 3 | 3 | 67583414 | 67581355 |
| AK092426 | Gold_good | 4 | 2183 | 2 | 2182 | 12 | 3 | 13953902 | 14082480 |
| AK093778 | Gold_bad | 1 | 1939 | 266 | 227 | 1 | 15 | 45719361 | 45719589 |
| AK093778 | Gold_excellent | 2 | 1939 | 1 | 1721 | 4 | 3 | 153374617 | 153376323 |
| AK094551 | Gold_excellent | 2 | 3147 | 1 | 3147 | 1 | 3 | 122706985 | 122703859 |
| AK095063 | Gold_excellent | 2 | 2728 | 1 | 2728 | 9 | 3 | 145029400 | 145032112 |
| AK096705 | Gold_excellent | 7 | 2988 | 1 | 2987 | 8 | 3 | 123833462 | 123792609 |
| AK123213 | Gold_excellent | 7 | 2650 | 1 | 2650 | 4 | 3 | 68970586 | 68957777 |
| AK124137 | Gold_excellent | 4 | 1923 | 1 | 1918 | 3 | 3 | 3143704 | 3147344 |
| AK124168 | Gold_good | 2 | 2267 | 1 | 2267 | 20 | 3 | 195624240 | 195625786 |
| AK126111 | Gold_good | 2 | 1779 | 2 | 1778 | 12 | 3 | 40462590 | 40464357 |
| AK126698 | Gold_good | 3 | 3826 | 1 | 3826 | 39 | 3 | 196770106 | 196773901 |
| AK130674 | Gold_good | 2 | 1912 | 1 | 1912 | 22 | 3 | 62660690 | 62658788 |
| AL137671 | Gold_bad | 1 | 2029 | 1723 | 136 | 0 | 3 | 52415200 | 52415336 |
| AL137671 | Gold_bad | 1 | 2029 | 1851 | 179 | 0 | 9 | 126833676 | 126833855 |
| AL137671 | Gold_excellent | 5 | 2029 | 1 | 1727 | 0 | 3 | 52412405 | 52415769 |
| AL831922 | Gold_excellent | 9 | 4051 | 1 | 4051 | 11 | 3 | 198124395 | 198096425 |
| AL832072 | Gold_good | 4 | 6854 | 1 | 6854 | 31 | 3 | 120462523 | 120469388 |
| AL833216 | Gold_excellent | 7 | 4415 | 1 | 4415 | 13 | 3 | 73029133 | 73039250 |
| AL834397 | Gold_excellent | 9 | 2196 | 1 | 2196 | 7 | 3 | 3143636 | 3165704 |
| BC005134 | Gold_partial | 6 | 804 | 12 | 793 | 2 | 3 | 40459972 | 40464451 |
| BC009294 | Gold_partial | 7 | 732 | 9 | 724 | 0 | 3 | 40459411 | 40464359 |
| BC013229 | Gold_good | 3 | 2775 | 1 | 2775 | 13 | 3 | 184326181 | 184337204 |
| BC014200 | Gold_excellent | 2 | 2217 | 13 | 2205 | 2 | 3 | 129863467 | 129865653 |
| BC016304 | Gold_excellent | 5 | 2268 | 1 | 2268 | 9 | 3 | 14034054 | 14082480 |
| BC019651 | Gold_good | 7 | 709 | 2 | 708 | 3 | 3 | 40459438 | 40464357 |
| BC028935 | Gold_excellent | 2 | 1941 | 2 | 1940 | 6 | 3 | 68959378 | 68957446 |
| BC035518 | Gold_excellent | 2 | 1800 | 11 | 1798 | 3 | 3 | 115356376 | 115354588 |
| BC039202 | Gold_bad | 2 | 1200 | 759 | 442 | 3 | 3 | 69104631 | 69102153 |
| BC039202 | Gold_good | 3 | 1200 | 1 | 753 | 8 | 3 | 69104816 | 69101935 |
| BC040051 | Gold_good | 2 | 569 | 1 | 569 | 7 | 3 | 144041218 | 144040659 |
| BC040935 | Gold_good | 2 | 2020 | 1 | 2020 | 13 | 3 | 184335213 | 184337204 |
| BC042157 | Gold_excellent | 2 | 2624 | 1 | 2624 | 10 | 3 | 130430346 | 130427733 |
| BC043572 | Gold_excellent | 5 | 2002 | 1 | 2002 | 4 | 3 | 132421228 | 132364846 |
| BC063125 | Gold_excellent | 8 | 2988 | 3 | 2986 | 7 | 3 | 5138930 | 5197591 |
| BX537521 | Gold_excellent | 5 | 3830 | 15 | 3830 | 15 | 3 | 147125417 | 147114626 |
| BX538242 | Gold_excellent | 3 | 8674 | 1 | 8674 | 14 | 3 | 71068424 | 71058389 |
| BX640685 | Gold_good | 2 | 6336 | 1 | 6336 | 32 | 3 | 173426486 | 173432809 |
| BX648034 | Gold_excellent | 5 | 4058 | 2 | 4057 | 13 | 3 | 180643495 | 180666348 |
| BX648237 | Gold_excellent | 6 | 8512 | 2 | 8511 | 12 | 3 | 116187028 | 115832642 |
| BX648525 | Gold_good | 13 | 3119 | 2 | 3118 | 22 | 3 | 184439194 | 184337147 |
| BX649003 | Gold_excellent | 29 | 7836 | 2 | 7835 | 25 | 3 | 184439249 | 184231351 |