Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK057363 | Gold_dubious | 3 | 1982 | 11 | 1972 | 34 | 4 | 138419474 | 138408585 |
AK097863 | Gold_dubious | 3 | 2646 | 1 | 2646 | 73 | 4 | 39856294 | 39852239 |
AK098337 | Gold_bad | 1 | 2493 | 2298 | 196 | 0 | 3 | 50114026 | 50114222 |
AK098337 | Gold_dubious | 1 | 2493 | 1 | 2303 | 72 | 4 | 49094879 | 49097186 |
AK124097 | Gold_bad | 2 | 2351 | 1276 | 1074 | 44 | 4 | 49427747 | 49428853 |
AK124097 | Gold_dubious | 1 | 2351 | 1 | 1281 | 8 | 4 | 57436 | 58717 |
AK124473 | Gold_dubious | 3 | 2210 | 1 | 2210 | 37 | 4 | 24412362 | 24424072 |
AK125298 | Gold_dubious | 2 | 2352 | 1 | 2352 | 40 | 4 | 49105039 | 49102371 |
AK128295 | Gold_dubious | 1 | 1220 | 1 | 1188 | 33 | 4 | 39044390 | 39043202 |
AL122048 | Gold_dubious | 4 | 988 | 14 | 975 | 17 | 4 | 2040424 | 2035324 |
BC012205 | Gold_dubious | 5 | 776 | 1 | 776 | 19 | 4 | 84489391 | 84470240 |
BC029568 | Gold_dubious | 6 | 1136 | 172 | 965 | 24 | 4 | 191167442 | 191193899 |
BC032654 | Gold_dubious | 23 | 3950 | 12 | 3947 | 71 | 4 | 77108254 | 77193759 |
BC033389 | Gold_bad | 1 | 1421 | 102 | 73 | 4 | 7 | 57489014 | 57488941 |
BC033389 | Gold_dubious | 2 | 1421 | 174 | 1248 | 32 | 4 | 191168036 | 191169917 |
BC035466 | Gold_dubious | 1 | 89 | 1 | 52 | 0 | 4 | 7122894 | 7122843 |
BC036250 | Gold_dubious | 5 | 1042 | 1 | 1042 | 23 | 4 | 1097148 | 1076926 |
BC036878 | Gold_dubious | 2 | 1757 | 1 | 1757 | 33 | 4 | 17212915 | 17211121 |
BC041768 | Gold_dubious | 2 | 993 | 1 | 993 | 25 | 4 | 3003102 | 3004339 |