Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK024195 Gold_bad 1 2359 1 30 0 4 153010104 153010075
AK024195 Gold_partial 1 2359 235 2125 13 4 57780131 57778008
AK025394 Gold_partial 8 1812 22 1788 16 4 5807991 5935798
AK125566 Gold_partial 5 2349 27 2323 26 4 1632274 1604028
AK127528 Gold_bad 1 4308 3136 1173 13 4 87925615 87924443
AK127528 Gold_partial 1 4308 1 2892 3 4 87920900 87918009
AK128759 Gold_partial 3 3510 1 3270 27 4 187617327 187614015
AK129655 Gold_bad 7 3919 1 1907 3 4 44644147 44619714
AK129655 Gold_partial 1 3919 1956 1964 0 4 1930944 1932907
AK130485 Gold_bad 1 957 738 170 0 5 132287486 132287317
AK130485 Gold_partial 3 957 1 731 1 4 71564393 71571505
AK130590 Gold_bad 1 2612 2358 255 1 4 54813598 54813344
AK130590 Gold_partial 1 2612 1 2085 16 4 54814350 54812265
AL133076 Gold_bad 1 1245 21 77 0 4 185325536 185325460
AL133076 Gold_partial 3 1245 98 1115 0 4 185325522 185335415
AL136932 Gold_partial 25 3889 12 3812 1 4 155083613 155135403
AL359562 Gold_partial 1 757 1 742 1 4 749798 750539
AL831903 Gold_partial 13 2385 30 2356 9 4 74474339 74434459
AL832010 Gold_partial 26 4130 1 4012 16 4 77108177 77193834
BC005276 Gold_bad 1 1516 1287 230 0 16 71870998 71871228
BC005276 Gold_partial 1 1516 2 1261 2 4 75431164 75429904
BC006398 Gold_partial 17 2118 1 2010 14 4 77108180 77180673
BC006574 Gold_partial 3 3333 1 3223 17 4 3545513 3542238
BC007841 Gold_partial 2 3726 9 3561 37 4 3543050 3539495
BC010461 Gold_partial 7 2819 1 2728 3 4 177429304 177250417
BC013950 Gold_partial 3 3388 1 3223 17 4 3545513 3542238
BC018885 Gold_bad 6 2671 10 1007 3 6 32868937 32874591
BC018885 Gold_partial 1 2671 1087 1594 5 4 39735376 39733783
BC018955 Gold_partial 2 3726 1 3561 37 4 3543050 3539495
BC022508 Gold_partial 7 2835 1 2744 5 4 177429305 177250403
BC022528 Gold_partial 8 2857 4 2761 2 4 177619371 177250394
BC026299 Gold_partial 1 834 12 823 2 4 40403406 40402584
BC029735 Gold_partial 11 1635 1 1612 2 4 41584173 41615375
BC032524 Gold_partial 2 1904 36 1877 0 4 101329850 101327642
BC032777 Gold_partial 14 2435 249 2195 2 4 7921843 7829807
BC036070 Gold_partial 5 3223 1 3169 20 4 176535449 176595222
BC042071 Gold_partial 8 2773 1 2592 10 4 1647493 1604034
BC044612 Gold_partial 8 2808 1 2715 8 4 177429792 177250913
BC047874 Gold_partial 2 1913 119 1690 9 4 49322 146259
BC053954 Gold_partial 8 2808 1 2715 8 4 177429792 177250913
BC062661 Gold_partial 1 611 11 601 0 4 17637259 17636659