Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK024195 | Gold_bad | 1 | 2359 | 1 | 30 | 0 | 4 | 153010104 | 153010075 |
AK024195 | Gold_partial | 1 | 2359 | 235 | 2125 | 13 | 4 | 57780131 | 57778008 |
AK025394 | Gold_partial | 8 | 1812 | 22 | 1788 | 16 | 4 | 5807991 | 5935798 |
AK125566 | Gold_partial | 5 | 2349 | 27 | 2323 | 26 | 4 | 1632274 | 1604028 |
AK127528 | Gold_bad | 1 | 4308 | 3136 | 1173 | 13 | 4 | 87925615 | 87924443 |
AK127528 | Gold_partial | 1 | 4308 | 1 | 2892 | 3 | 4 | 87920900 | 87918009 |
AK128759 | Gold_partial | 3 | 3510 | 1 | 3270 | 27 | 4 | 187617327 | 187614015 |
AK129655 | Gold_bad | 7 | 3919 | 1 | 1907 | 3 | 4 | 44644147 | 44619714 |
AK129655 | Gold_partial | 1 | 3919 | 1956 | 1964 | 0 | 4 | 1930944 | 1932907 |
AK130485 | Gold_bad | 1 | 957 | 738 | 170 | 0 | 5 | 132287486 | 132287317 |
AK130485 | Gold_partial | 3 | 957 | 1 | 731 | 1 | 4 | 71564393 | 71571505 |
AK130590 | Gold_bad | 1 | 2612 | 2358 | 255 | 1 | 4 | 54813598 | 54813344 |
AK130590 | Gold_partial | 1 | 2612 | 1 | 2085 | 16 | 4 | 54814350 | 54812265 |
AL133076 | Gold_bad | 1 | 1245 | 21 | 77 | 0 | 4 | 185325536 | 185325460 |
AL133076 | Gold_partial | 3 | 1245 | 98 | 1115 | 0 | 4 | 185325522 | 185335415 |
AL136932 | Gold_partial | 25 | 3889 | 12 | 3812 | 1 | 4 | 155083613 | 155135403 |
AL359562 | Gold_partial | 1 | 757 | 1 | 742 | 1 | 4 | 749798 | 750539 |
AL831903 | Gold_partial | 13 | 2385 | 30 | 2356 | 9 | 4 | 74474339 | 74434459 |
AL832010 | Gold_partial | 26 | 4130 | 1 | 4012 | 16 | 4 | 77108177 | 77193834 |
BC005276 | Gold_bad | 1 | 1516 | 1287 | 230 | 0 | 16 | 71870998 | 71871228 |
BC005276 | Gold_partial | 1 | 1516 | 2 | 1261 | 2 | 4 | 75431164 | 75429904 |
BC006398 | Gold_partial | 17 | 2118 | 1 | 2010 | 14 | 4 | 77108180 | 77180673 |
BC006574 | Gold_partial | 3 | 3333 | 1 | 3223 | 17 | 4 | 3545513 | 3542238 |
BC007841 | Gold_partial | 2 | 3726 | 9 | 3561 | 37 | 4 | 3543050 | 3539495 |
BC010461 | Gold_partial | 7 | 2819 | 1 | 2728 | 3 | 4 | 177429304 | 177250417 |
BC013950 | Gold_partial | 3 | 3388 | 1 | 3223 | 17 | 4 | 3545513 | 3542238 |
BC018885 | Gold_bad | 6 | 2671 | 10 | 1007 | 3 | 6 | 32868937 | 32874591 |
BC018885 | Gold_partial | 1 | 2671 | 1087 | 1594 | 5 | 4 | 39735376 | 39733783 |
BC018955 | Gold_partial | 2 | 3726 | 1 | 3561 | 37 | 4 | 3543050 | 3539495 |
BC022508 | Gold_partial | 7 | 2835 | 1 | 2744 | 5 | 4 | 177429305 | 177250403 |
BC022528 | Gold_partial | 8 | 2857 | 4 | 2761 | 2 | 4 | 177619371 | 177250394 |
BC026299 | Gold_partial | 1 | 834 | 12 | 823 | 2 | 4 | 40403406 | 40402584 |
BC029735 | Gold_partial | 11 | 1635 | 1 | 1612 | 2 | 4 | 41584173 | 41615375 |
BC032524 | Gold_partial | 2 | 1904 | 36 | 1877 | 0 | 4 | 101329850 | 101327642 |
BC032777 | Gold_partial | 14 | 2435 | 249 | 2195 | 2 | 4 | 7921843 | 7829807 |
BC036070 | Gold_partial | 5 | 3223 | 1 | 3169 | 20 | 4 | 176535449 | 176595222 |
BC042071 | Gold_partial | 8 | 2773 | 1 | 2592 | 10 | 4 | 1647493 | 1604034 |
BC044612 | Gold_partial | 8 | 2808 | 1 | 2715 | 8 | 4 | 177429792 | 177250913 |
BC047874 | Gold_partial | 2 | 1913 | 119 | 1690 | 9 | 4 | 49322 | 146259 |
BC053954 | Gold_partial | 8 | 2808 | 1 | 2715 | 8 | 4 | 177429792 | 177250913 |
BC062661 | Gold_partial | 1 | 611 | 11 | 601 | 0 | 4 | 17637259 | 17636659 |