Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK021484 | Gold_bad | 1 | 3422 | 1 | 508 | 2 | 4 | 120427047 | 120427555 |
AK021484 | Gold_excellent | 1 | 3422 | 503 | 2920 | 7 | 4 | 120412874 | 120415793 |
AK024677 | Gold_bad | 1 | 1824 | 4 | 536 | 1 | 4 | 77297001 | 77296466 |
AK024677 | Gold_excellent | 9 | 1824 | 539 | 1286 | 5 | 4 | 77320523 | 77297031 |
AK024979 | Gold_bad | 1 | 3860 | 3128 | 733 | 0 | 4 | 16634858 | 16634109 |
AK024979 | Gold_excellent | 1 | 3860 | 1 | 3127 | 7 | 4 | 16630113 | 16626987 |
AK091452 | Gold_bad | 1 | 2162 | 1 | 936 | 2 | 4 | 10146595 | 10145660 |
AK091452 | Gold_excellent | 2 | 2162 | 934 | 1229 | 4 | 4 | 10163621 | 10162360 |
AK127528 | Gold_bad | 1 | 4308 | 3136 | 1173 | 13 | 4 | 87925615 | 87924443 |
AK127528 | Gold_partial | 1 | 4308 | 1 | 2892 | 3 | 4 | 87920900 | 87918009 |
AK130285 | Gold_bad | 1 | 2082 | 1187 | 896 | 1 | 4 | 16635020 | 16634126 |
AK130285 | Gold_excellent | 1 | 2082 | 1 | 1186 | 0 | 4 | 16612192 | 16611007 |
AK130554 | Gold_bad | 1 | 3938 | 1 | 1867 | 5 | 4 | 181793097 | 181794964 |
AK130554 | Gold_excellent | 1 | 3938 | 1868 | 2066 | 0 | 4 | 181789493 | 181791558 |
AK130576 | Gold_bad | 2 | 1738 | 1 | 852 | 0 | 4 | 87103866 | 87104737 |
AK130576 | Gold_excellent | 3 | 1738 | 853 | 886 | 1 | 4 | 86854923 | 87101933 |
BC020836 | Gold_bad | 4 | 1200 | 1 | 393 | 12 | 4 | 114383 | 328222 |
BC020836 | Gold_good | 2 | 1200 | 391 | 809 | 2 | 4 | 184864 | 186092 |
BX647242 | Gold_bad | 1 | 6202 | 5142 | 1061 | 1 | 4 | 44618458 | 44619518 |
BX647242 | Gold_excellent | 17 | 6202 | 1 | 5147 | 16 | 4 | 44595986 | 44621939 |