Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK021484 Gold_bad 1 3422 1 508 2 4 120427047 120427555
AK021484 Gold_excellent 1 3422 503 2920 7 4 120412874 120415793
AK024677 Gold_bad 1 1824 4 536 1 4 77297001 77296466
AK024677 Gold_excellent 9 1824 539 1286 5 4 77320523 77297031
AK024979 Gold_bad 1 3860 3128 733 0 4 16634858 16634109
AK024979 Gold_excellent 1 3860 1 3127 7 4 16630113 16626987
AK091452 Gold_bad 1 2162 1 936 2 4 10146595 10145660
AK091452 Gold_excellent 2 2162 934 1229 4 4 10163621 10162360
AK127528 Gold_bad 1 4308 3136 1173 13 4 87925615 87924443
AK127528 Gold_partial 1 4308 1 2892 3 4 87920900 87918009
AK130285 Gold_bad 1 2082 1187 896 1 4 16635020 16634126
AK130285 Gold_excellent 1 2082 1 1186 0 4 16612192 16611007
AK130554 Gold_bad 1 3938 1 1867 5 4 181793097 181794964
AK130554 Gold_excellent 1 3938 1868 2066 0 4 181789493 181791558
AK130576 Gold_bad 2 1738 1 852 0 4 87103866 87104737
AK130576 Gold_excellent 3 1738 853 886 1 4 86854923 87101933
BC020836 Gold_bad 4 1200 1 393 12 4 114383 328222
BC020836 Gold_good 2 1200 391 809 2 4 184864 186092
BX647242 Gold_bad 1 6202 5142 1061 1 4 44618458 44619518
BX647242 Gold_excellent 17 6202 1 5147 16 4 44595986 44621939