Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK000016 | Gold_dubious | 1 | 834 | 1 | 834 | 15 | 5 | 30001048 | 30001883 |
AK024538 | Gold_dubious | 1 | 179 | 1 | 84 | 0 | 5 | 113994391 | 113994474 |
AK026267 | Gold_dubious | 2 | 1095 | 4 | 1095 | 21 | 5 | 180453586 | 180454268 |
AK091812 | Gold_dubious | 1 | 1889 | 1 | 1889 | 29 | 5 | 38874068 | 38872180 |
AK093716 | Gold_dubious | 1 | 1929 | 1 | 1929 | 38 | 5 | 134160960 | 134162886 |
AK094260 | Gold_dubious | 1 | 1872 | 1 | 1871 | 30 | 5 | 11872726 | 11870855 |
AK096220 | Gold_dubious | 8 | 2872 | 14 | 2836 | 61 | 5 | 876949 | 763213 |
AK125293 | Gold_bad | 1 | 2139 | 1400 | 33 | 1 | 3 | 143921800 | 143921768 |
AK125293 | Gold_bad | 1 | 2139 | 1439 | 30 | 0 | 19 | 53978556 | 53978527 |
AK125293 | Gold_dubious | 1 | 2139 | 1307 | 30 | 0 | 5 | 23205789 | 23205760 |
AK125735 | Gold_bad | 1 | 1436 | 1336 | 101 | 3 | 5 | 75110872 | 75110973 |
AK125735 | Gold_dubious | 5 | 1436 | 1 | 1057 | 20 | 5 | 75097538 | 75112756 |
AK128694 | Gold_dubious | 3 | 4067 | 1 | 4067 | 109 | 5 | 38869048 | 38864983 |
AK129636 | Gold_bad | 1 | 1646 | 1370 | 277 | 10 | 5 | 132329915 | 132329639 |
AK129636 | Gold_bad | 2 | 1646 | 442 | 935 | 22 | 5 | 132331048 | 132316505 |
AK129636 | Gold_dubious | 1 | 1646 | 1 | 309 | 1 | 5 | 132317287 | 132316979 |
AK129721 | Gold_dubious | 1 | 2441 | 1 | 2441 | 57 | 5 | 132373494 | 132371053 |
AL831864 | Gold_dubious | 2 | 2462 | 1 | 2462 | 55 | 5 | 1519680 | 1514283 |
BC017904 | Gold_dubious | 1 | 871 | 1 | 871 | 15 | 5 | 118540113 | 118540983 |
BC026956 | Gold_dubious | 8 | 2443 | 1 | 2443 | 59 | 5 | 149241088 | 149255777 |
BC039501 | Gold_dubious | 2 | 1287 | 166 | 1122 | 24 | 5 | 167068381 | 167061129 |