Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
BC007784 | Gold_bad | 1 | 1052 | 1 | 43 | 0 | 5 | 37333069 | 37333112 |
BC007784 | Gold_excellent | 1 | 1052 | 40 | 1013 | 0 | 5 | 37333051 | 37332038 |
BC026892 | Gold_bad | 1 | 1310 | 1 | 45 | 0 | 5 | 156802239 | 156802195 |
BC026892 | Gold_excellent | 1 | 1310 | 41 | 1270 | 0 | 5 | 156802221 | 156803491 |
BC030521 | Gold_bad | 1 | 2117 | 1 | 61 | 0 | 5 | 71612344 | 71612404 |
BC030521 | Gold_excellent | 5 | 2117 | 59 | 2059 | 3 | 5 | 71612365 | 71599426 |
BX537747 | Gold_bad | 1 | 3210 | 1 | 135 | 0 | 5 | 45307642 | 45307776 |
BX537747 | Gold_excellent | 1 | 3210 | 131 | 3080 | 4 | 5 | 45307934 | 45304854 |
BX640909 | Gold_bad | 1 | 3726 | 3154 | 573 | 3 | 5 | 140970101 | 140970675 |
BX640909 | Gold_excellent | 1 | 3726 | 1 | 3155 | 8 | 5 | 140973787 | 140970635 |