Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
BC007784 Gold_bad 1 1052 1 43 0 5 37333069 37333112
BC007784 Gold_excellent 1 1052 40 1013 0 5 37333051 37332038
BC026892 Gold_bad 1 1310 1 45 0 5 156802239 156802195
BC026892 Gold_excellent 1 1310 41 1270 0 5 156802221 156803491
BC030521 Gold_bad 1 2117 1 61 0 5 71612344 71612404
BC030521 Gold_excellent 5 2117 59 2059 3 5 71612365 71599426
BX537747 Gold_bad 1 3210 1 135 0 5 45307642 45307776
BX537747 Gold_excellent 1 3210 131 3080 4 5 45307934 45304854
BX640909 Gold_bad 1 3726 3154 573 3 5 140970101 140970675
BX640909 Gold_excellent 1 3726 1 3155 8 5 140973787 140970635