| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK024836 | Gold_excellent | 6 | 1449 | 1 | 1449 | 2 | 6 | 31344618 | 31341276 |
| AK026595 | Gold_bad | 8 | 1533 | 7 | 1533 | 47 | 6 | 31429143 | 31425843 |
| AK027084 | Gold_dubious | 7 | 1432 | 1 | 1432 | 42 | 6 | 30016149 | 30019485 |
| AK056727 | Gold_good | 2 | 2454 | 1 | 2454 | 20 | 6 | 30000792 | 29998300 |
| AK092921 | Gold_dubious | 5 | 2513 | 1 | 2513 | 40 | 6 | 29999906 | 30003303 |
| AK093478 | Gold_good | 7 | 1898 | 2 | 1897 | 21 | 6 | 29902775 | 29906806 |
| AK097625 | Gold_good | 6 | 2261 | 1 | 2261 | 28 | 6 | 30017053 | 29972890 |
| AK098007 | Gold_good | 5 | 2026 | 1 | 2026 | 16 | 6 | 32778316 | 32770884 |
| AK124160 | Gold_dubious | 8 | 1793 | 1 | 1793 | 44 | 6 | 31429180 | 31425837 |
| AK125608 | Gold_bad | 6 | 1902 | 1 | 1900 | 61 | 6 | 30016149 | 30019388 |
| AK126421 | Gold_bad | 6 | 2054 | 2 | 2034 | 158 | 6 | 32757586 | 32656109 |
| AK129796 | Gold_bad | 8 | 1537 | 1 | 1537 | 48 | 6 | 31429147 | 31425843 |
| AK130137 | Gold_dubious | 8 | 1537 | 1 | 1537 | 43 | 6 | 31429147 | 31425843 |
| AK130148 | Gold_bad | 8 | 1532 | 16 | 1533 | 46 | 6 | 30016149 | 30019485 |
| AK130153 | Gold_bad | 8 | 1434 | 14 | 1435 | 45 | 6 | 30016149 | 30019387 |
| AK130155 | Gold_dubious | 8 | 1540 | 7 | 1540 | 40 | 6 | 31429143 | 31425836 |
| AK130165 | Gold_dubious | 8 | 1532 | 18 | 1533 | 44 | 6 | 30016149 | 30019485 |
| AK130166 | Gold_dubious | 8 | 1538 | 1 | 1538 | 39 | 6 | 31429147 | 31425843 |
| AK130169 | Gold_dubious | 8 | 1537 | 7 | 1538 | 39 | 6 | 31429147 | 31425843 |
| AK130592 | Gold_good | 11 | 1448 | 5 | 1444 | 11 | 6 | 31429143 | 31341278 |
| AK130598 | Gold_good | 5 | 1474 | 1 | 1474 | 12 | 6 | 32656343 | 32662569 |
| AK130654 | Gold_bad | 10 | 1483 | 1 | 1483 | 57 | 6 | 31429146 | 31425836 |
| AK130811 | Gold_bad | 5 | 1152 | 1 | 1152 | 86 | 6 | 32656341 | 32662240 |
| AK130838 | Gold_excellent | 5 | 1465 | 1 | 1465 | 0 | 6 | 32656341 | 32662563 |
| BC001023 | Gold_bad | 6 | 1179 | 1 | 1179 | 85 | 6 | 32612289 | 32534902 |
| BC002463 | Gold_bad | 8 | 1521 | 1 | 1521 | 55 | 6 | 31344600 | 31341276 |
| BC003069 | Gold_dubious | 8 | 1414 | 1 | 1414 | 22 | 6 | 30016170 | 30019387 |
| BC005312 | Gold_bad | 6 | 1171 | 1 | 1171 | 78 | 6 | 32612292 | 32573295 |
| BC007243 | Gold_bad | 8 | 1517 | 1 | 1517 | 48 | 6 | 31429120 | 31425836 |
| BC007814 | Gold_excellent | 8 | 1515 | 1 | 1515 | 4 | 6 | 31344594 | 31341278 |
| BC007920 | Gold_good | 6 | 1163 | 1 | 1163 | 13 | 6 | 32612275 | 32598928 |
| BC007963 | Gold_excellent | 6 | 1043 | 1 | 1043 | 1 | 6 | 33090673 | 33101431 |
| BC008403 | Gold_dubious | 6 | 1171 | 1 | 1171 | 23 | 6 | 32612292 | 32598936 |
| BC008457 | Gold_bad | 8 | 1544 | 1 | 1544 | 61 | 6 | 31344606 | 31341278 |
| BC008585 | Gold_excellent | 5 | 1422 | 1 | 1422 | 0 | 6 | 32656360 | 32662539 |
| BC008611 | Gold_bad | 8 | 1418 | 1 | 1418 | 51 | 6 | 30016166 | 30019387 |
| BC008987 | Gold_excellent | 6 | 1138 | 1 | 1138 | 0 | 6 | 32547950 | 32534902 |
| BC009234 | Gold_bad | 6 | 1162 | 1 | 1156 | 97 | 6 | 32612272 | 32534908 |
| BC009956 | Gold_dubious | 6 | 1168 | 1 | 1168 | 33 | 6 | 33088265 | 33079681 |
| BC010542 | Gold_bad | 8 | 1515 | 1 | 1515 | 54 | 6 | 31344594 | 31341276 |
| BC012106 | Gold_bad | 5 | 1141 | 1 | 1141 | 45 | 6 | 32680851 | 32673753 |
| BC013184 | Gold_bad | 6 | 1493 | 1 | 1493 | 49 | 6 | 33090655 | 33101863 |
| BC013187 | Gold_dubious | 8 | 1525 | 1 | 1525 | 28 | 6 | 31429135 | 31425843 |
| BC013828 | Gold_good | 4 | 618 | 1 | 618 | 7 | 6 | 31427192 | 31425846 |
| BC015000 | Gold_good | 6 | 1049 | 1 | 1049 | 15 | 6 | 33090673 | 33101437 |
| BC017967 | Gold_excellent | 3 | 1188 | 1 | 1188 | 0 | 6 | 33127115 | 33133813 |
| BC018832 | Gold_bad | 6 | 1179 | 1 | 1179 | 85 | 6 | 32612289 | 32534902 |
| BC018834 | Gold_bad | 6 | 1179 | 1 | 1179 | 85 | 6 | 32612289 | 32534902 |
| BC018835 | Gold_bad | 6 | 1179 | 1 | 1179 | 85 | 6 | 32612289 | 32534902 |
| BC019236 | Gold_dubious | 8 | 1524 | 1 | 1524 | 43 | 6 | 30016166 | 30019493 |
| BC021708 | Gold_dubious | 9 | 1397 | 1 | 1397 | 24 | 6 | 29902755 | 29906806 |
| BC024269 | Gold_bad | 7 | 1154 | 1 | 1154 | 78 | 6 | 32612272 | 32534910 |
| BC031023 | Gold_dubious | 6 | 1177 | 1 | 1177 | 18 | 6 | 32612292 | 32598930 |
| BC031995 | Gold_excellent | 5 | 1058 | 1 | 1058 | 4 | 6 | 32778274 | 32770884 |
| BC033293 | Gold_excellent | 8 | 1526 | 1 | 1526 | 0 | 6 | 31344603 | 31341276 |
| BC035647 | Gold_excellent | 5 | 1654 | 8 | 1655 | 1 | 6 | 30000767 | 30003303 |
| BC041078 | Gold_bad | 8 | 1534 | 1 | 1534 | 60 | 6 | 31344630 | 31341276 |
| BC051832 | Gold_bad | 9 | 2123 | 1 | 2100 | 182 | 6 | 32656362 | 32761674 |
| BX647315 | Gold_bad | 8 | 1537 | 1 | 1536 | 51 | 6 | 31429148 | 31425845 |