Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK000928 | Gold_bad | 4 | 2012 | 1267 | 746 | 3 | 6 | 32165451 | 32159715 |
AK000928 | Gold_partial | 6 | 2012 | 1 | 1244 | 2 | 6 | 32159666 | 32156569 |
AK021743 | Gold_bad | 1 | 2004 | 6 | 88 | 0 | 6 | 16779127 | 16779040 |
AK021743 | Gold_excellent | 1 | 2004 | 94 | 1911 | 2 | 6 | 16799656 | 16797746 |
AK022413 | Gold_bad | 2 | 2261 | 1 | 642 | 6 | 6 | 107508196 | 107507516 |
AK022413 | Gold_good | 1 | 2261 | 637 | 1625 | 10 | 6 | 107537594 | 107535968 |
AK023412 | Gold_bad | 1 | 2654 | 1 | 472 | 0 | 6 | 151747194 | 151747665 |
AK023412 | Gold_excellent | 1 | 2654 | 474 | 2181 | 1 | 6 | 151743936 | 151746118 |
AK025235 | Gold_bad | 1 | 2067 | 1877 | 187 | 0 | 6 | 47312293 | 47312107 |
AK025235 | Gold_excellent | 1 | 2067 | 1 | 1882 | 1 | 6 | 47301606 | 47299725 |
AK025753 | Gold_bad | 1 | 2278 | 1 | 364 | 0 | 6 | 7229436 | 7229073 |
AK025753 | Gold_excellent | 1 | 2278 | 363 | 1916 | 4 | 6 | 7231877 | 7229961 |
AK026843 | Gold_bad | 1 | 2078 | 1 | 302 | 1 | 6 | 13896722 | 13896421 |
AK026843 | Gold_good | 2 | 2078 | 294 | 1785 | 16 | 6 | 13897352 | 13894951 |
AK027364 | Gold_bad | 1 | 2708 | 1 | 320 | 0 | 6 | 149183550 | 149183869 |
AK027364 | Gold_bad | 1 | 2708 | 320 | 483 | 0 | 6 | 154809582 | 154809100 |
AK027364 | Gold_excellent | 1 | 2708 | 806 | 1903 | 5 | 6 | 154812337 | 154810435 |
AK027727 | Gold_bad | 1 | 1959 | 1769 | 93 | 1 | 6 | 166773973 | 166773881 |
AK027727 | Gold_bad | 3 | 1959 | 1396 | 362 | 1 | 6 | 166771610 | 166753227 |
AK027727 | Gold_partial | 1 | 1959 | 1 | 1377 | 2 | 6 | 166733991 | 166732614 |
AK055208 | Gold_bad | 2 | 2538 | 1 | 1015 | 1 | 6 | 47026870 | 47024168 |
AK055208 | Gold_excellent | 1 | 2538 | 1011 | 1528 | 0 | 6 | 47028886 | 47027359 |
AK095253 | Gold_bad | 3 | 3252 | 620 | 946 | 2 | 6 | 41944157 | 41946093 |
AK095253 | Gold_partial | 1 | 3252 | 1566 | 1687 | 9 | 6 | 41942404 | 41944090 |
AK126182 | Gold_bad | 1 | 2140 | 876 | 297 | 0 | 6 | 30759833 | 30759537 |
AK126182 | Gold_excellent | 4 | 2140 | 1 | 1855 | 4 | 6 | 30759160 | 30750337 |
AK130107 | Gold_bad | 1 | 1443 | 1 | 314 | 0 | 6 | 42732131 | 42731818 |
AK130107 | Gold_good | 2 | 1443 | 314 | 1130 | 7 | 6 | 42734022 | 42731231 |
AK130229 | Gold_bad | 2 | 1460 | 314 | 153 | 1 | 6 | 7500972 | 7503419 |
AK130229 | Gold_good | 2 | 1460 | 1 | 1335 | 12 | 6 | 7529963 | 7531803 |
BC040644 | Gold_bad | 1 | 2539 | 1611 | 929 | 1 | 6 | 100633672 | 100634600 |
BC040644 | Gold_excellent | 1 | 2539 | 1 | 1611 | 1 | 6 | 100638828 | 100640438 |