Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK000928 Gold_bad 4 2012 1267 746 3 6 32165451 32159715
AK000928 Gold_partial 6 2012 1 1244 2 6 32159666 32156569
AK021743 Gold_bad 1 2004 6 88 0 6 16779127 16779040
AK021743 Gold_excellent 1 2004 94 1911 2 6 16799656 16797746
AK022413 Gold_bad 2 2261 1 642 6 6 107508196 107507516
AK022413 Gold_good 1 2261 637 1625 10 6 107537594 107535968
AK023412 Gold_bad 1 2654 1 472 0 6 151747194 151747665
AK023412 Gold_excellent 1 2654 474 2181 1 6 151743936 151746118
AK025235 Gold_bad 1 2067 1877 187 0 6 47312293 47312107
AK025235 Gold_excellent 1 2067 1 1882 1 6 47301606 47299725
AK025753 Gold_bad 1 2278 1 364 0 6 7229436 7229073
AK025753 Gold_excellent 1 2278 363 1916 4 6 7231877 7229961
AK026843 Gold_bad 1 2078 1 302 1 6 13896722 13896421
AK026843 Gold_good 2 2078 294 1785 16 6 13897352 13894951
AK027364 Gold_bad 1 2708 1 320 0 6 149183550 149183869
AK027364 Gold_bad 1 2708 320 483 0 6 154809582 154809100
AK027364 Gold_excellent 1 2708 806 1903 5 6 154812337 154810435
AK027727 Gold_bad 1 1959 1769 93 1 6 166773973 166773881
AK027727 Gold_bad 3 1959 1396 362 1 6 166771610 166753227
AK027727 Gold_partial 1 1959 1 1377 2 6 166733991 166732614
AK055208 Gold_bad 2 2538 1 1015 1 6 47026870 47024168
AK055208 Gold_excellent 1 2538 1011 1528 0 6 47028886 47027359
AK095253 Gold_bad 3 3252 620 946 2 6 41944157 41946093
AK095253 Gold_partial 1 3252 1566 1687 9 6 41942404 41944090
AK126182 Gold_bad 1 2140 876 297 0 6 30759833 30759537
AK126182 Gold_excellent 4 2140 1 1855 4 6 30759160 30750337
AK130107 Gold_bad 1 1443 1 314 0 6 42732131 42731818
AK130107 Gold_good 2 1443 314 1130 7 6 42734022 42731231
AK130229 Gold_bad 2 1460 314 153 1 6 7500972 7503419
AK130229 Gold_good 2 1460 1 1335 12 6 7529963 7531803
BC040644 Gold_bad 1 2539 1611 929 1 6 100633672 100634600
BC040644 Gold_excellent 1 2539 1 1611 1 6 100638828 100640438