Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AB040899 Gold_bad 1 4520 1 50 0 7 134278557 134278607
AB040899 Gold_bad 1 4520 47 190 0 7 134278563 134278374
AB040899 Gold_excellent 1 4520 232 4289 1 7 134278536 134282824
AK022078 Gold_bad 1 2290 15 142 2 7 1606702 1606844
AK022078 Gold_good 1 2290 154 2137 10 7 1608571 1606433
AK025044 Gold_bad 1 2995 1 476 0 7 107003720 107004195
AK025044 Gold_bad 1 2995 477 1233 5 7 107001674 107002907
AK025044 Gold_good 1 2995 1628 1385 11 7 107000616 106999215
AK026723 Gold_bad 1 1977 1 917 3 7 29432362 29431447
AK026723 Gold_good 1 1977 918 1060 6 7 29429779 29430838
AL162043 Gold_bad 1 2693 1 60 0 7 110328957 110329016
AL162043 Gold_excellent 1 2693 61 2633 7 7 110329060 110326428
BC008645 Gold_bad 1 820 20 84 0 7 25966651 25966735
BC008645 Gold_partial 1 820 100 721 0 7 25966677 25965957
BC018563 Gold_bad 1 2569 2322 248 0 7 99888938 99889186
BC018563 Gold_excellent 8 2569 1 2327 7 7 99892604 99889502