Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AB040899 | Gold_bad | 1 | 4520 | 1 | 50 | 0 | 7 | 134278557 | 134278607 |
AB040899 | Gold_bad | 1 | 4520 | 47 | 190 | 0 | 7 | 134278563 | 134278374 |
AB040899 | Gold_excellent | 1 | 4520 | 232 | 4289 | 1 | 7 | 134278536 | 134282824 |
AK022078 | Gold_bad | 1 | 2290 | 15 | 142 | 2 | 7 | 1606702 | 1606844 |
AK022078 | Gold_good | 1 | 2290 | 154 | 2137 | 10 | 7 | 1608571 | 1606433 |
AK025044 | Gold_bad | 1 | 2995 | 1 | 476 | 0 | 7 | 107003720 | 107004195 |
AK025044 | Gold_bad | 1 | 2995 | 477 | 1233 | 5 | 7 | 107001674 | 107002907 |
AK025044 | Gold_good | 1 | 2995 | 1628 | 1385 | 11 | 7 | 107000616 | 106999215 |
AK026723 | Gold_bad | 1 | 1977 | 1 | 917 | 3 | 7 | 29432362 | 29431447 |
AK026723 | Gold_good | 1 | 1977 | 918 | 1060 | 6 | 7 | 29429779 | 29430838 |
AL162043 | Gold_bad | 1 | 2693 | 1 | 60 | 0 | 7 | 110328957 | 110329016 |
AL162043 | Gold_excellent | 1 | 2693 | 61 | 2633 | 7 | 7 | 110329060 | 110326428 |
BC008645 | Gold_bad | 1 | 820 | 20 | 84 | 0 | 7 | 25966651 | 25966735 |
BC008645 | Gold_partial | 1 | 820 | 100 | 721 | 0 | 7 | 25966677 | 25965957 |
BC018563 | Gold_bad | 1 | 2569 | 2322 | 248 | 0 | 7 | 99888938 | 99889186 |
BC018563 | Gold_excellent | 8 | 2569 | 1 | 2327 | 7 | 7 | 99892604 | 99889502 |