Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK022463 Gold_bad 4 1709 1432 278 0 X 134039125 134032538
AK022463 Gold_excellent 8 1709 1 1431 2 X 134032414 134016445
AK098115 Gold_bad 6 2995 2395 601 0 X 46086740 46090479
AK098115 Gold_excellent 9 2995 1 2396 9 X 46074764 46091769
BC030771 Gold_bad 1 959 4 167 3 X 121744150 121744317
BC030771 Gold_good 1 959 171 789 3 X 121743054 121743843