Gene	LocusID	Title	GO molecular processes	Map	#PFAM motif	GO Biological process	accession intron or no	GO Cellular compartment	Phenotype
ANAPC1	64682;285069	gene ANAPC1 encoding anaphase-promoting complex 1 (meiotic checkpoint regulator).			1
ank.12/ ank.13	57730	gene ank.12/ ank.13 encoding KIAA1641 protein.	ankyrin		1
ArfGap.8/ glamu	255326	gene ArfGap.8 (and glamu) encoding hypothetical protein LOC255326.	DNA binding		3			nucleus
CAPRI	10156;246721	gene CAPRI encoding Ca2+-promoted Ras inactivator.	DNA binding activity; GTPase activator activity;		5	intracellular signaling cascade; transcription regulation
CES1/ CESR	1066;51716	gene CES1 and CESR, encoding carboxylesterase 1 (monocyte/macrophage serine esterase 1).	serine esterase activity; hydrolase activity		1	embryogenesis and morphogenesis; metabolism; response to toxin; xenobiotic metabolism		endoplasmic reticulum; extracellular space
CLN3	1201	gene CLN3 encoding ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease).	chaperone activity		1	protein folding		mitochondrion; membrane	[OMIM 204200] Ceroid, lipofuscinosis, neuronal, 3, juvenile
CPEB1	64506; 338963;6218	gene CPEB1 encoding cytoplasmic polyadenylation element binding protein 1.	nucleic acid binding activity		1	protein biosynthesis		intracellular; ribosome
CSAGE	9598;158511	gene CSAGE encoding taxol resistance associated gene 3.
dara/ spyspee/ terswee	283768	gene dara, spyspee or terswee encoding hypothetical protein DKFZp434P162.
DAZ.1/ DAZ3	1617;57055; 57054;57135	gene DAZ.1 encoding deleted in azoospermia; DAZ3 deleted in azoospermia 3.	RNA binding activity;nucleic acid binding activity		1	fertilization (sensu Animalia); spermatogenesis
DDX41	51428	gene DDX41 encoding DEAD (Asp-Glu-Ala-Asp) box polypeptide 41.	RNA binding activity; ATP dependent helicase activity		3	apoptosis; development; RNA processing		nucleus
deerubu/ rumeybu	343070	gene deerubu or rumeybu, encoding hypothetical protein LOC343070.
DEFA1	1667;1668	gene DEFA1 encoding defensin, alpha 1, myeloid-related sequence.	antifungal peptide activity		2	defense response; xenobiotic metabolism		extracellular
DMRTC1	63947;203429	gene DMRTC1 encoding DMRT-like family C1.
EIF3S8	8663	gene EIF3S8 encoding eukaryotic translation initiation factor 3, subunit 8, 110kDa.	translation initiation factor activity		2	regulation of translational initiation		eukaryotic translation initiation factor 3 complex
ENIGMA/ LIM.4	9260	gene ENIGMA encoding enigma (LIM domain protein).			2	intracellular signaling cascade; receptor mediated endocytosis
FKBP6 / FKBP6.1/ FKBP6.2 / FKBP6.3	8468; 54441	gene FKBP6 or .1,.2,.3, encoding FK506 binding protein 6, 36kDa.	FK506 binding activity; zinc ion binding		1 to 3	protein folding		intracellular
Gaa1.0	96626;339692	gene Gaa1.0 encoding pinch-2.			2
GAGE1	2543;2574;2575; 2576;2577;2578; 2579;26748; 26749;89801	gene GAGE1 encoding G antigen 1.			2	cellular defense response
GAGED2/ GAGED2.1	9503	gene GAGED2 or GAGED2.1, encoding G antigen, family D, 2.			1
GAGED3 / GAGED3.1	9502	gene GAGED3 or GAGED3.1, encoding G antigen, family D, 3.			1
geefor	55747	gene geefor encoding hypothetical protein FLJ10824.
GOLGIN-67	23015	gene GOLGIN-67 encoding golgin-67.						Golgi apparatus
GSTT2/ DDT	2953	gene GSTT2 encoding glutathione S-transferase theta 2.			2
GTF2H2/ GTF2H2.1	2966	gene GTF2H2.1 encoding general transcription factor IIH, polypeptide 2, 44kDa.			1	DNA repair; regulation of transcription, DNA-dependent		nucleus
GTF2I/ GTF2I.1	2969;2970	gene GTF2I encoding general transcription factor II, i.	protein binding activity; transcription factor activity		1	regulation of transcription initiation from Pol II promoter, DNA-dependent; signal transduction		nucleus
GTF2IRD2/ GTF2I.4	54441;84163	gene GTF2IRD2 encoding DKFZp434A0131 protein./ gene GTF2I.4 encoding transcription factor GTF2IRD2.			3/2
HEAT.2/ HEAT.4	84500	gene HEAT.2 or HEAT.4, encoding KIAA1833 protein.			1
heyu	374676	gene heyu encoding similar to golgi autoantigen, golgin subfamily a, 2; SY11 protein.
HIST2H4	8370	gene HIST2H4 encoding histone 2, H4.	DNA binding		1
HSFY	55410;86614; 159119;83869	gene HSFY encoding chromosome Y open reading frame 14.	transcription factor activity		1	regulation of transcription, DNA-dependent		nucleus
HSGP25L2G	54732	gene HSGP25L2G encoding gp25L2 protein.	protein carrier activity		1	intracellular protein transport		membrane
IRS.4	79930	gene IRS.4 encoding Dok-like protein.	insulin receptor binding		2
joyplaw	57234	gene joyplaw encoding KIAA0493 protein.
kerira/ niho	54540	gene kerira or niho, encoding hypothetical protein FLJ10404.
koby	255313	gene koby encoding hypothetical protein LOC255313.
koharu	159110	gene koharu encoding hypothetical protein LOC159110.
korva / koyva/ swoydoy	158852	gene korva or koyva or swoydoy, encoding hypothetical protein MGC27005.
LAT1-3TM	81893	gene LAT1-3TM encoding LAT1-3TM protein.	transcription regulator activity		2
LGALS7	3963	genes LGALS7 encoding lectin, galactoside-binding, soluble, 7 (galectin 7).	lectin;sugar binding activity		1	heterophilic cell adhesion; cell growth and/or maintenance		extracellular space
LW-1	51402	gene LW-1 encoding LW-1.	transcription factor activity		1	regulation of transcription, DNA-dependent		nucleus
MAGE.2	81557	gene MAGE.2 encoding melanoma antigen, family D, 4.			1
MAGEA2	9598;266740; 4101;4111	gene MAGEA2 encoding taxol resistance associated gene 3.			1	drug resistance
MAGEA2b	266740; 4101;4105	gene MAGEA2b encoding melanoma antigen, family A, 2, copy b.			1
MAGEA9	4108	gene MAGEA9 encoding melanoma antigen, family A, 9.			1
MAGED4	81557	gene MAGED4 encoding melanoma antigen, family D, 4.			1
MORN.6	222967;285927	gene MORN.6 encoding hypothetical protein LOC222967.			1
mowaro	84771;348448; 349338;349410	gene mowaro encoding hypothetical protein MGC13005.
MRC1	4360	gene MRC1 encoding mannose receptor, C type 1.	sugar binding activity; mannose binding activity; calcium ion binding activity; receptor activity		3	heterophilic cell adhesion; pinocytosis; receptor mediated endocytosis		integral to plasma membrane
nawfu	252946	gene nawfu encoding chromosome Y open reading frame 16.
NBR2.1/ arf.11	51326;10230	gene NBR2.1 encoding ARF protein./gene arf.11 encoding ARF protein.			1
novar	51402	gene novar encoding LW-1.	transcription factor activity		1	regulation of transcription, DNA-dependent		nucleus
NXF2/ NXF2.1	56001	gene NXF2 or NXF2.1 encoding nuclear RNA export factor 2.	protein transporter activity; RNA binding activity		4	protein-nucleus import; mRNA processing; mRNA-nucleus export;		intracellular; nuclear RNA export factor complex; nucleus
PEPP-2	84528	gene PEPP-2 encoding PEPP subfamily gene 2.	transcription factor activity		1	regulation of transcription, DNA-dependent		nucleus
PLGL.1	112597;5342	gene PLGL.1 encoding hypothetical protein MGC4677.	plasmin activity		3
PM5 / Cna_B.0	283820;23420	gene PM5 (or Cna_B.0) encoding hypothetical protein LOC283820.			1
PRO0659/ hiri	29057	gene PRO0659 (or hiri), encoding PRO0659 protein.
RANBP2L1/ RANBP2L1.1/ RANBP2L1.2	84220	gene RANBP2L1 encoding RAN binding protein 2-like 1.	RAN protein binding activity		1 or 3
RBMY1A1.2/ RBMY1A1.3	5940; 159163	gene RBMY1A1.2/3 encoding RNA binding motif protein, Y-linked, family 1, member A1.	RNA binding activity		1	RNA processing; spermatogenesis		nucleus
resa	339091	gene resa encoding hypothetical protein LOC339091.
reyara	151009	gene reyara encoding hypothetical protein FLJ38359.
risi/ rusi	80154	gene risi or rusi, encoding hypothetical protein FLJ22795.
RPS17	6218	gene RPS17 encoding ribosomal protein S17.	RNA binding activity		1	protein biosynthesis; cytosolic small ribosomal subunit (sensu Eukarya)		intracellular; ribosome; cytosolic small ribosomal subunit (sensu Eukarya)
SCP.0/ SCP.7	283971;348174	gene SCP.0 or 7, encoding hypothetical protein MGC34761.	sugar binding		4			extracellular
SERF1A.1	8293;6606;6607	gene SERF1A.1 encoding small EDRK-rich factor 1A (telomeric).			2
SFTPA1/ SFTPA1.1	6435	gene SFTPA1 encoding surfactant, pulmonary-associated protein A1.	sugar binding		2			extracellular space
shardawbu/ shodawbu	150527	gene shardawbu or shodawbu encoding hypothetical protein LOC150527.
skerzar	80154	gene skerzar encoding hypothetical protein FLJ22795.
skeyplar	84771;348448; 349410	gene skeyplar encoding hypothetical protein MGC13005.
SMN1	6606	gene SMN1 encoding survival of motor neuron 1, telomeric.			1				[OMIM 158590] Spinal muscular atrophy, 4
SMN2	6606;6607	gene SMN2 encoding survival of motor neuron 2.			1
SMP1/ UPF0220.0	23585	gene SMP1 or UPF0220.0, encoding small membrane protein 1.			1			integral to membrane
sneera/ storar	348162	gene sneera or storar encoding hypothetical protein MGC9515.
SSX1	6756;6759	gene SSX1 encoding synovial sarcoma, X breakpoint 1.	nucleic acid binding activity; transcription co-repressor activity		1	regulation of transcription, DNA-dependent; cell growth and/or maintenance		intracellular/ nucleus	[OMIM 300326] Sarcoma, synovial
SSX2	6757	gene SSX2 encoding synovial sarcoma, X breakpoint 2.	nucleic acid binding		1	regulation of transcription, DNA-dependent		intracellular	[OMIM 300192] Sarcoma, synovial
SSX4	6759	gene SSX4 encoding synovial sarcoma, X breakpoint 4.	nucleic acid binding		1	regulation of transcription, DNA-dependent		intracellular
steeju	24150	gene steeju encoding TP53TG3 protein.
stovy	340618	gene stovy encoding hypothetical protein LOC340618.
STRC	161497	gene STRC encoding stereocilin.							[OMIM 603720] Deafness, autosomal recessive 16
SULT1A3	79008;6818	gene SULT1A3 encoding hypothetical protein MGC5178.	aryl sulfotransferase activity; transferase activity		2	steroid metabolism; synaptic transmission		cytoplasm
TBC1D3	339284;84218	gene TBC1D3 encoding hypothetical protein FLJ11822.	membrane alanyl aminopeptidase activity		2	proteolysis and peptidolysis
THOC3	84321	gene THOC3 encoding THO complex 3.	RNA binding activity		1	mRNA-nucleus export; nuclear mRNA splicing, via spliceosome; transport		nucleus
titori	55911	gene titori encoding apolipoprotein B48 receptor.
TTTY8	84673	gene TTTY8 encoding testis-specific transcript, Y-linked 8.
VCY	9084	gene VCY encoding variable charge, Y-linked.
waneri	9677	gene waneri encoding KIAA0377 gene product.			1
WBSCR16	81554	gene WBSCR16 encoding Williams-Beuren syndrome chromosome region 16.			1
Y_phosphatase.7/ kloraby	26095	gene Y_phosphatase.7 or kloraby, encoding DKFZP566K0524 protein.	protein tyrosine phosphatase activity		1	protein amino acid dephosphorylation

Genes repeated in the pseudo-autosomal region: (none has been associated to a phenotype in OMIM as of december 03)