Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK000252 | Gold_bad | 3 | 4071 | 2685 | 1363 | 27 | 9|NT_078081 | 31529 | 42998 |
AK000655 | Gold_bad | 1 | 584 | 1 | 216 | 4 | 1|NT_077964 | 193338 | 193552 |
AK023361 | Gold_bad | 3 | 2346 | 959 | 1364 | 27 | 9|NT_078081 | 31529 | 42997 |
AK024414 | Gold_bad | 7 | 2520 | 1 | 1142 | 19 | 7 | 129713373 | 129699085 |
AK057495 | Gold_bad | 1 | 1765 | 89 | 65 | 3 | 6 | 25315017 | 25315083 |
AK057495 | Gold_bad | 1 | 1765 | 1489 | 41 | 1 | 11 | 6985749 | 6985709 |
AK057495 | Gold_bad | 2 | 1765 | 1309 | 110 | 2 | 1 | 224817597 | 224817907 |
AK057572 | Gold_bad | 1 | 2487 | 1041 | 195 | 5 | X | 135226204 | 135226010 |
AK057572 | Gold_bad | 1 | 2487 | 1602 | 113 | 1 | 16 | 14547422 | 14547311 |
AK094243 | Gold_bad | 1 | 2324 | 199 | 55 | 2 | X | 46311450 | 46311396 |
AK094243 | Gold_bad | 1 | 2324 | 327 | 45 | 0 | 8 | 26990734 | 26990690 |
AK124167 | Gold_bad | 1 | 1994 | 1714 | 72 | 3 | 9 | 33068526 | 33068598 |
AK124167 | Gold_bad | 1 | 1994 | 1810 | 45 | 0 | 12 | 47761138 | 47761094 |
AK125305 | Gold_bad | 1 | 2521 | 480 | 32 | 0 | 1 | 140849918 | 140849950 |
AK125305 | Gold_bad | 1 | 2521 | 772 | 183 | 4 | 1 | 141193816 | 141193999 |
AK125305 | Gold_bad | 1 | 2521 | 2320 | 32 | 1 | 5 | 89799821 | 89799790 |
AK128489 | Gold_bad | 1 | 3263 | 1470 | 39 | 1 | 2 | 58061787 | 58061826 |
AK130991 | Gold_bad | 1 | 690 | 128 | 35 | 0 | 16 | 31187315 | 31187350 |
AK130991 | Gold_bad | 1 | 690 | 254 | 112 | 3 | 11 | 77589575 | 77589687 |
BC013858 | Gold_bad | 1 | 1335 | 562 | 168 | 7 | 19 | 40758346 | 40758514 |
BC013858 | Gold_bad | 1 | 1335 | 1208 | 82 | 2 | 5 | 71230815 | 71230897 |
BC013858 | Gold_bad | 1 | 1335 | 1281 | 55 | 0 | 20 | 33864077 | 33864023 |
BC015783 | Gold_bad | 1 | 1737 | 1410 | 34 | 1 | 6 | 16274454 | 16274488 |
BC015783 | Gold_bad | 1 | 1737 | 1510 | 30 | 0 | 7 | 7648784 | 7648755 |
BC033874 | Gold_bad | 1 | 277 | 1 | 166 | 4 | 1 | 198721929 | 198721763 |
BX647273 | Gold_bad | 1 | 1388 | 1055 | 321 | 9 | 4 | 36678117 | 36677797 |