| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AB033071 | Gold_dubious | 54 | 6896 | 736 | 6152 | 181 | 1 | 142564570 | 143116447 |
| AB051480 | Gold_bad | 2 | 4239 | 2475 | 1756 | 68 | 1|NT_077949 | 121294 | 103975 |
| AB051480 | Gold_dubious | 15 | 4239 | 1 | 1954 | 4 | 1 | 16293115 | 16273984 |
| AK000907 | Gold_dubious | 3 | 1561 | 191 | 1371 | 35 | 2 | 25551039 | 25517192 |
| AK021987 | Gold_bad | 1 | 1862 | 7 | 624 | 10 | 15 | 62561300 | 62560677 |
| AK021987 | Gold_dubious | 3 | 1862 | 498 | 1219 | 44 | 15 | 62602493 | 62596289 |
| AK022421 | Gold_bad | 1 | 2134 | 1 | 463 | 12 | 7 | 98368319 | 98367857 |
| AK022421 | Gold_dubious | 1 | 2134 | 498 | 1636 | 20 | 7 | 98378305 | 98376671 |
| AK024309 | Gold_dubious | 10 | 2566 | 1 | 2229 | 41 | 1 | 952269 | 923263 |
| AK024407 | Gold_dubious | 2 | 2345 | 41 | 2305 | 40 | 19 | 58388375 | 58359220 |
| AK027173 | Gold_dubious | 2 | 1794 | 1 | 1573 | 30 | 20 | 3987309 | 3964857 |
| AK054813 | Gold_bad | 1 | 1600 | 1 | 433 | 12 | X | 147320143 | 147319709 |
| AK054813 | Gold_dubious | 1 | 1600 | 895 | 706 | 20 | X | 147761036 | 147761740 |
| AK056120 | Gold_dubious | 11 | 2814 | 100 | 2715 | 56 | 1|NT_079486 | 164318 | 176786 |
| AK057614 | Gold_dubious | 13 | 1764 | 1 | 1734 | 52 | 14 | 104787928 | 104276321 |
| AK094221 | Gold_bad | 2 | 1853 | 335 | 354 | 10 | 2 | 9568342 | 9567877 |
| AK094221 | Gold_bad | 2 | 1853 | 683 | 450 | 12 | 2 | 9568438 | 9567877 |
| AK094221 | Gold_dubious | 2 | 1853 | 1015 | 839 | 12 | 2 | 9568438 | 9567540 |
| AK096220 | Gold_dubious | 8 | 2872 | 14 | 2836 | 61 | 5 | 876949 | 763213 |
| AK097171 | Gold_bad | 2 | 2511 | 1 | 219 | 3 | 19 | 11959471 | 11973639 |
| AK097171 | Gold_dubious | 1 | 2511 | 437 | 2070 | 32 | 6 | 159954921 | 159952852 |
| AK097305 | Gold_dubious | 10 | 1611 | 1 | 1503 | 45 | 14 | 105142101 | 104145137 |
| AK097359 | Gold_dubious | 5 | 1622 | 4 | 1249 | 25 | 14 | 104490605 | 104179353 |
| AK097366 | Gold_dubious | 7 | 1620 | 2 | 1407 | 41 | 14 | 104787926 | 104179360 |
| AK097584 | Gold_dubious | 1 | 1688 | 58 | 1631 | 29 | 10 | 133770363 | 133768736 |
| AK097955 | Gold_dubious | 10 | 1625 | 3 | 1589 | 24 | 14 | 105151014 | 104145137 |
| AK098817 | Gold_bad | 1 | 1990 | 1722 | 269 | 0 | 11 | 62059003 | 62058735 |
| AK098817 | Gold_dubious | 10 | 1990 | 1 | 1618 | 34 | 14 | 104697409 | 104179351 |
| AK123070 | Gold_dubious | 5 | 1612 | 345 | 1185 | 19 | 14 | 104510819 | 104179360 |
| AK123399 | Gold_dubious | 2 | 2237 | 2 | 2159 | 46 | 19 | 49038051 | 49040235 |
| AK123783 | Gold_dubious | 10 | 1624 | 3 | 1579 | 38 | 14 | 104898398 | 104145137 |
| AK125079 | Gold_dubious | 13 | 1554 | 1 | 1522 | 38 | 14 | 105055433 | 104024902 |
| AK125561 | Gold_dubious | 4 | 2244 | 40 | 2205 | 51 | 7 | 5313666 | 5311125 |
| AK125735 | Gold_bad | 1 | 1436 | 1336 | 101 | 3 | 5 | 75110872 | 75110973 |
| AK125735 | Gold_dubious | 5 | 1436 | 1 | 1057 | 20 | 5 | 75097538 | 75112756 |
| AK125792 | Gold_dubious | 18 | 3827 | 203 | 3625 | 73 | 1 | 143038457 | 143118990 |
| AK126281 | Gold_dubious | 9 | 1624 | 1 | 1497 | 44 | 14 | 104613727 | 104179353 |
| AK126608 | Gold_dubious | 3 | 2707 | 112 | 2596 | 77 | 16 | 89836775 | 89852059 |
| AK127378 | Gold_dubious | 4 | 2638 | 698 | 1841 | 31 | 16 | 89833599 | 89852059 |
| AK127415 | Gold_dubious | 8 | 1628 | 1 | 1592 | 34 | 14 | 104663879 | 104179353 |
| AK128042 | Gold_dubious | 1 | 3396 | 153 | 3244 | 61 | 2 | 896062 | 892823 |
| AK128295 | Gold_dubious | 1 | 1220 | 1 | 1188 | 33 | 4 | 39044390 | 39043202 |
| AK128845 | Gold_dubious | 5 | 3582 | 1 | 3133 | 54 | 19 | 56543596 | 56540240 |
| AK129510 | Gold_dubious | 8 | 1626 | 1 | 1601 | 39 | 14 | 104985153 | 104179353 |
| AK129512 | Gold_dubious | 15 | 1589 | 2 | 1501 | 37 | 14 | 105142101 | 104179360 |
| AK129636 | Gold_bad | 1 | 1646 | 1370 | 277 | 10 | 5 | 132329915 | 132329639 |
| AK129636 | Gold_bad | 2 | 1646 | 442 | 935 | 22 | 5 | 132331048 | 132316505 |
| AK129636 | Gold_dubious | 1 | 1646 | 1 | 309 | 1 | 5 | 132317287 | 132316979 |
| AK129809 | Gold_dubious | 6 | 1531 | 1 | 1456 | 25 | 14 | 105142104 | 104179360 |
| AK130023 | Gold_bad | 1 | 2022 | 1289 | 496 | 5 | 3 | 53183770 | 53184266 |
| AK130023 | Gold_bad | 1 | 2022 | 1779 | 244 | 0 | 3 | 53183739 | 53184002 |
| AK130023 | Gold_dubious | 3 | 2022 | 64 | 1157 | 41 | 3 | 53181854 | 53188008 |
| AK130433 | Gold_dubious | 11 | 1611 | 1 | 1587 | 45 | 14 | 105103236 | 104145137 |
| AK130434 | Gold_bad | 1 | 1639 | 1 | 136 | 6 | 14 | 104582528 | 104582393 |
| AK130434 | Gold_dubious | 4 | 1639 | 505 | 1135 | 23 | 14 | 104209428 | 104179352 |
| AK130453 | Gold_dubious | 11 | 1636 | 1 | 1586 | 43 | 14 | 104663879 | 104145133 |
| AK130465 | Gold_dubious | 7 | 1584 | 1 | 1536 | 27 | 14 | 104777354 | 104145137 |
| AK130468 | Gold_dubious | 11 | 1645 | 20 | 1582 | 37 | 14 | 105184701 | 104145133 |
| AK130577 | Gold_dubious | 5 | 1642 | 1 | 1249 | 23 | 14 | 104763211 | 104179360 |
| AK130611 | Gold_dubious | 11 | 1582 | 1 | 1553 | 41 | 14 | 104849768 | 104179354 |
| AK130614 | Gold_dubious | 9 | 1607 | 4 | 1553 | 32 | 14 | 104490605 | 104081083 |
| AK130786 | Gold_dubious | 12 | 1594 | 1 | 1557 | 45 | 14 | 105142101 | 104179360 |
| AK130796 | Gold_dubious | 8 | 1575 | 1 | 1538 | 32 | 14 | 104777357 | 104145137 |
| AK130825 | Gold_dubious | 8 | 1903 | 1 | 1856 | 33 | 14 | 104424844 | 104037954 |
| AL110190 | Gold_dubious | 2 | 2025 | 538 | 1488 | 37 | 17 | 75704599 | 75707732 |
| AL122048 | Gold_dubious | 4 | 988 | 14 | 975 | 17 | 4 | 2040424 | 2035324 |
| AL122049 | Gold_dubious | 2 | 1285 | 1 | 1268 | 31 | 12 | 26115882 | 26128481 |
| AL137725 | Gold_dubious | 3 | 1787 | 108 | 1341 | 25 | 8 | 145055502 | 145045481 |
| BC002783 | Gold_dubious | 4 | 1536 | 9 | 1455 | 23 | 9|NT_078081 | 34796 | 80376 |
| BC003675 | Gold_dubious | 2 | 220 | 1 | 203 | 5 | 20 | 44861469 | 44859771 |
| BC006164 | Gold_bad | 1 | 1582 | 1 | 488 | 7 | 12 | 8832135 | 8832622 |
| BC006164 | Gold_dubious | 3 | 1582 | 790 | 677 | 12 | 12 | 8831612 | 8839651 |
| BC010437 | Gold_dubious | 5 | 2780 | 1 | 2642 | 41 | 2 | 170793066 | 170809543 |
| BC012835 | Gold_dubious | 4 | 1538 | 1 | 1465 | 33 | 9|NT_078081 | 34786 | 80376 |
| BC014667 | Gold_dubious | 7 | 1641 | 1 | 1595 | 44 | 14 | 104582516 | 104179353 |
| BC016381 | Gold_dubious | 12 | 1622 | 5 | 1524 | 31 | 14 | 105142098 | 104106134 |
| BC017024 | Gold_dubious | 4 | 2015 | 1 | 1930 | 42 | 21 | 10120823 | 10079192 |
| BC029276 | Gold_bad | 1 | 985 | 3 | 54 | 1 | 8 | 70652301 | 70652248 |
| BC029276 | Gold_bad | 1 | 985 | 228 | 366 | 1 | 1 | 91324949 | 91324584 |
| BC029276 | Gold_dubious | 3 | 985 | 706 | 224 | 8 | 12 | 126004086 | 126003701 |
| BC029568 | Gold_dubious | 6 | 1136 | 172 | 965 | 24 | 4 | 191167442 | 191193899 |
| BC029907 | Gold_bad | 1 | 1390 | 4 | 32 | 0 | 16 | 27736428 | 27736460 |
| BC029907 | Gold_dubious | 2 | 1390 | 131 | 1260 | 23 | 1 | 93273000 | 93269598 |
| BC031679 | Gold_dubious | 1 | 163 | 1 | 155 | 3 | 2 | 201938424 | 201938270 |
| BC031919 | Gold_dubious | 3 | 1459 | 17 | 1443 | 27 | 2 | 128699646 | 128694394 |
| BC032484 | Gold_bad | 5 | 2948 | 2100 | 849 | 0 | X | 147769452 | 147825486 |
| BC032484 | Gold_dubious | 6 | 2948 | 1 | 2011 | 47 | X | 147326968 | 147320166 |
| BC033389 | Gold_bad | 1 | 1421 | 102 | 73 | 4 | 7 | 57489014 | 57488941 |
| BC033389 | Gold_dubious | 2 | 1421 | 174 | 1248 | 32 | 4 | 191168036 | 191169917 |
| BC037276 | Gold_dubious | 4 | 1298 | 6 | 1081 | 20 | 21 | 10049386 | 10042392 |
| BC037893 | Gold_dubious | 3 | 1653 | 533 | 1121 | 22 | 17 | 41296679 | 41267325 |
| BC039481 | Gold_dubious | 2 | 1694 | 1 | 1659 | 28 | 6 | 43606623 | 43602818 |
| BC039501 | Gold_dubious | 2 | 1287 | 166 | 1122 | 24 | 5 | 167068381 | 167061129 |
| BC046646 | Gold_bad | 1 | 695 | 10 | 124 | 0 | 1 | 146793160 | 146793284 |
| BC046646 | Gold_dubious | 3 | 695 | 133 | 563 | 14 | 1 | 142757605 | 142768869 |
| BC047651 | Gold_dubious | 3 | 1649 | 529 | 1121 | 22 | 17 | 41296679 | 41267325 |
| BC047907 | Gold_dubious | 3 | 2793 | 104 | 2690 | 44 | 12 | 54333505 | 54371188 |
| BC051328 | Gold_dubious | 7 | 1578 | 1 | 1554 | 33 | 14 | 104613715 | 104179360 |
| BC062335 | Gold_dubious | 7 | 1593 | 1 | 1542 | 39 | 14 | 104490592 | 104081084 |
| BC064842 | Gold_dubious | 3 | 1680 | 388 | 1275 | 36 | 1 | 17125843 | 17102774 |
| BX537801 | Gold_dubious | 1 | 170 | 1 | 151 | 3 | 1 | 39951465 | 39951614 |
| BX538066 | Gold_dubious | 6 | 1482 | 1 | 1458 | 41 | 14 | 104777318 | 104024904 |
| BX640623 | Gold_dubious | 7 | 1387 | 17 | 1356 | 28 | 14 | 104762875 | 104081084 |
| BX640626 | Gold_dubious | 9 | 1565 | 1 | 1492 | 43 | 14 | 104613727 | 104145137 |
| BX640710 | Gold_dubious | 7 | 1542 | 2 | 1522 | 31 | 14 | 104939205 | 104024904 |
| BX640791 | Gold_dubious | 3 | 2819 | 404 | 2416 | 41 | 13 | 94205462 | 94197329 |
| BX640847 | Gold_dubious | 6 | 1566 | 2 | 1350 | 23 | 14 | 104443408 | 104145135 |
| BX640853 | Gold_dubious | 10 | 1634 | 2 | 1609 | 43 | 14 | 104966022 | 104179354 |
| BX640854 | Gold_dubious | 8 | 1564 | 2 | 1527 | 31 | 14 | 104966022 | 104024906 |
| BX648399 | Gold_dubious | 18 | 4568 | 95 | 4439 | 103 | Un|NT_079624 | 111923 | 68997 |
| BX649049 | Gold_dubious | 1 | 342 | 10 | 333 | 5 | 3 | 127382720 | 127382388 |