| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AB033008 | Gold_dubious | 4 | 1246 | 1 | 473 | 2 | 9|NT_078081 | 16297 | 10655 |
| AK001481 | Gold_dubious | 8 | 3989 | 1 | 1283 | 7 | 1 | 12081129 | 12093398 |
| AK022934 | Gold_dubious | 14 | 2748 | 1 | 1370 | 16 | 7 | 129769802 | 129699375 |
| AK026800 | Gold_dubious | 6 | 1884 | 3 | 1049 | 6 | X|NT_079578 | 49913 | 34366 |
| AK026899 | Gold_bad | 1 | 2506 | 1918 | 371 | 3 | 16 | 69722368 | 69722737 |
| AK026899 | Gold_bad | 1 | 2506 | 2282 | 243 | 4 | 16 | 18458504 | 18458749 |
| AK026899 | Gold_dubious | 1 | 2506 | 1 | 786 | 3 | 7 | 65408500 | 65407712 |
| AK054870 | Gold_bad | 1 | 3201 | 1652 | 36 | 2 | 1 | 67810543 | 67810581 |
| AK054870 | Gold_bad | 1 | 3201 | 1664 | 58 | 2 | 2 | 30050208 | 30050151 |
| AK054870 | Gold_dubious | 1 | 3201 | 1 | 1354 | 10 | 22 | 34404512 | 34403159 |
| AK057071 | Gold_dubious | 4 | 2438 | 1 | 1014 | 7 | 9 | 69983674 | 70055285 |
| AK092688 | Gold_bad | 1 | 1785 | 1329 | 52 | 0 | 1 | 224817649 | 224817597 |
| AK092688 | Gold_bad | 1 | 1785 | 1509 | 41 | 1 | 11 | 6985709 | 6985749 |
| AK092688 | Gold_dubious | 1 | 1785 | 34 | 62 | 1 | 8 | 127551810 | 127551871 |
| AK092753 | Gold_bad | 1 | 1820 | 1 | 82 | 0 | 2 | 89087202 | 89087283 |
| AK092753 | Gold_dubious | 1 | 1820 | 1454 | 367 | 5 | 2 | 89062396 | 89062030 |
| AK125237 | Gold_bad | 1 | 2222 | 1163 | 33 | 0 | 2 | 161738244 | 161738212 |
| AK125237 | Gold_bad | 1 | 2222 | 1857 | 75 | 5 | 5 | 54920043 | 54919967 |
| AK125237 | Gold_dubious | 4 | 2222 | 1 | 643 | 1 | 10 | 27551697 | 27581759 |
| AK125293 | Gold_bad | 1 | 2139 | 1400 | 33 | 1 | 3 | 143921800 | 143921768 |
| AK125293 | Gold_bad | 1 | 2139 | 1439 | 30 | 0 | 19 | 53978556 | 53978527 |
| AK125293 | Gold_dubious | 1 | 2139 | 1307 | 30 | 0 | 5 | 23205789 | 23205760 |
| AK128491 | Gold_bad | 1 | 4174 | 2191 | 30 | 0 | 4 | 84870241 | 84870271 |
| AK128491 | Gold_bad | 1 | 4174 | 2298 | 33 | 0 | 15 | 33360170 | 33360203 |
| AK128491 | Gold_dubious | 1 | 4174 | 2069 | 41 | 1 | 10 | 111385718 | 111385759 |
| AK130173 | Gold_dubious | 1 | 3060 | 1 | 230 | 1 | 1 | 3599950 | 3600178 |
| AK131084 | Gold_bad | 1 | 5537 | 5359 | 179 | 4 | 16 | 15164798 | 15164616 |
| AK131084 | Gold_bad | 7 | 5537 | 4520 | 804 | 11 | 16 | 14815487 | 14825487 |
| AK131084 | Gold_dubious | 5 | 5537 | 1 | 2252 | 5 | 16 | 15195709 | 15193017 |
| BC006100 | Gold_dubious | 3 | 1711 | 1 | 227 | 2 | 6 | 30645411 | 30651845 |
| BC016152 | Gold_dubious | 2 | 1393 | 1 | 141 | 1 | 1 | 28300938 | 28338663 |
| BC017443 | Gold_dubious | 14 | 2744 | 1 | 1366 | 14 | 7 | 129769798 | 129699375 |
| BC017907 | Gold_dubious | 1 | 1351 | 1091 | 261 | 2 | 2 | 240043983 | 240044243 |
| BC036357 | Gold_dubious | 4 | 2101 | 943 | 1159 | 9 | 1 | 31474309 | 31476639 |
| BC037788 | Gold_dubious | 1 | 3449 | 2935 | 495 | 2 | 22 | 47513038 | 47513532 |
| BC050094 | Gold_dubious | 2 | 1009 | 1 | 224 | 1 | 9|NT_078081 | 87974 | 88538 |
| BC056916 | Gold_bad | 1 | 1644 | 1133 | 33 | 0 | 11 | 68749400 | 68749368 |
| BC056916 | Gold_dubious | 1 | 1644 | 1268 | 36 | 1 | 20 | 5635541 | 5635577 |
| BX640780 | Gold_bad | 1 | 3642 | 2553 | 37 | 1 | 19 | 9776147 | 9776111 |
| BX640780 | Gold_bad | 1 | 3642 | 2646 | 45 | 1 | 4 | 177975878 | 177975834 |
| BX640780 | Gold_dubious | 1 | 3642 | 3255 | 388 | 3 | 13 | 112373995 | 112374382 |