| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AL050280 | Gold_dubious | 9 | 1819 | 2 | 1037 | 2 | 9|NT_078081 | 26853 | 10655 |
| AL110190 | Gold_dubious | 2 | 2025 | 538 | 1488 | 37 | 17 | 75704599 | 75707732 |
| AL117607 | Gold_dubious | 1 | 3663 | 1 | 1290 | 1 | 9 | 62544651 | 62543362 |
| AL117609 | Gold_dubious | 10 | 2524 | 1 | 1186 | 2 | 8 | 104384196 | 104411788 |
| AL122048 | Gold_dubious | 4 | 988 | 14 | 975 | 17 | 4 | 2040424 | 2035324 |
| AL122049 | Gold_dubious | 2 | 1285 | 1 | 1268 | 31 | 12 | 26115882 | 26128481 |
| AL137371 | Gold_dubious | 1 | 509 | 1 | 509 | 9 | 3 | 197517830 | 197518337 |
| AL137380 | Gold_dubious | 2 | 574 | 15 | 571 | 13 | 17|NT_079563 | 22670 | 21499 |
| AL137404 | Gold_dubious | 1 | 825 | 1 | 825 | 15 | 17 | 28044902 | 28045735 |
| AL137542 | Gold_dubious | 3 | 1234 | 1 | 1234 | 23 | 16 | 29976838 | 29978895 |
| AL137719 | Gold_dubious | 1 | 735 | 1 | 735 | 14 | 13 | 62210165 | 62209429 |
| AL137725 | Gold_dubious | 3 | 1787 | 108 | 1341 | 25 | 8 | 145055502 | 145045481 |
| AL359556 | Gold_dubious | 1 | 533 | 3 | 549 | 16 | 13 | 23714010 | 23714554 |
| AL512729 | Gold_dubious | 1 | 3414 | 1 | 3414 | 52 | 13 | 65528727 | 65525313 |
| AL831856 | Gold_dubious | 1 | 2786 | 1 | 2786 | 54 | 2 | 46263170 | 46265953 |
| AL831864 | Gold_dubious | 2 | 2462 | 1 | 2462 | 55 | 5 | 1519680 | 1514283 |
| AL832097 | Gold_dubious | 1 | 2769 | 1 | 1605 | 1 | 20 | 61838114 | 61839718 |
| AL832276 | Gold_dubious | 1 | 1444 | 1 | 1443 | 27 | 9 | 134339144 | 134337711 |
| AL832321 | Gold_dubious | 6 | 2617 | 13 | 2617 | 43 | 14 | 88410856 | 88251546 |
| AL832404 | Gold_dubious | 1 | 2466 | 1 | 2466 | 48 | 17 | 16430351 | 16432820 |
| AL832449 | Gold_dubious | 2 | 2448 | 51 | 1112 | 4 | 9|NT_078081 | 46667 | 5558 |
| AL832779 | Gold_dubious | 3 | 7609 | 1 | 7609 | 174 | Un|NT_079614 | 52708 | 42939 |
| AL832869 | Gold_dubious | 2 | 2865 | 1 | 1529 | 0 | 19 | 12600148 | 12601684 |
| AL833369 | Gold_dubious | 2 | 2917 | 1 | 2917 | 69 | 1 | 119880560 | 119737243 |
| AL833428 | Gold_dubious | 14 | 2504 | 1 | 2504 | 42 | 16 | 19533601 | 19595959 |
| AL833691 | Gold_dubious | 2 | 1278 | 1 | 1278 | 22 | 2 | 100060039 | 100058754 |
| AL834342 | Gold_dubious | 1 | 997 | 1 | 996 | 19 | 9|NT_078072 | 25466 | 24472 |
| BX537428 | Gold_dubious | 4 | 5310 | 2 | 1287 | 1 | Y | 15645119 | 15944920 |
| BX537508 | Gold_dubious | 4 | 3021 | 1 | 3039 | 52 | 1 | 78531914 | 78552356 |
| BX537742 | Gold_dubious | 1 | 2156 | 1 | 2156 | 47 | 3 | 133717109 | 133719264 |
| BX537801 | Gold_dubious | 1 | 170 | 1 | 151 | 3 | 1 | 39951465 | 39951614 |
| BX538005 | Gold_bad | 1 | 5625 | 3878 | 1751 | 9 | 1|NT_077949 | 121294 | 119546 |
| BX538005 | Gold_bad | 19 | 5625 | 1944 | 2327 | 99 | 1|NT_079497 | 31751 | 74330 |
| BX538005 | Gold_dubious | 12 | 5625 | 4 | 2155 | 65 | 1 | 142484811 | 142512789 |
| BX640780 | Gold_bad | 1 | 3642 | 2553 | 37 | 1 | 19 | 9776147 | 9776111 |
| BX640780 | Gold_bad | 1 | 3642 | 2646 | 45 | 1 | 4 | 177975878 | 177975834 |
| BX640780 | Gold_dubious | 1 | 3642 | 3255 | 388 | 3 | 13 | 112373995 | 112374382 |
| BX640791 | Gold_dubious | 3 | 2819 | 404 | 2416 | 41 | 13 | 94205462 | 94197329 |
| BX647352 | Gold_dubious | 14 | 3687 | 1 | 3687 | 99 | 1 | 167050785 | 167006144 |
| BX647358 | Gold_dubious | 5 | 5946 | 53 | 5894 | 142 | 16 | 74199456 | 74205486 |
| BX647933 | Gold_dubious | 5 | 603 | 1 | 603 | 15 | 19 | 18981780 | 18973438 |
| BX648024 | Gold_dubious | 17 | 3712 | 1 | 3711 | 66 | 20 | 34885966 | 34861941 |
| BX648399 | Gold_dubious | 18 | 4568 | 95 | 4439 | 103 | Un|NT_079624 | 111923 | 68997 |
| BX648600 | Gold_dubious | 1 | 4532 | 1 | 4532 | 75 | 6 | 3208756 | 3213279 |
| BX648890 | Gold_dubious | 4 | 4576 | 1 | 4595 | 84 | 17 | 66441567 | 66421996 |
| BX649049 | Gold_dubious | 1 | 342 | 10 | 333 | 5 | 3 | 127382720 | 127382388 |