Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AL117545 Gold_excellent 2 2114 2 2094 1 12 27008997 27010844
AL136932 Gold_partial 25 3889 12 3812 1 4 155083613 155135403
AL157485 Gold_partial 2 3261 1 3225 18 17 78612761 78609546
AL162007 Gold_partial 2 2923 1 2807 2 1 190200759 190197953
AL713630 Gold_partial 2 2916 1 2855 8 2 77291015 77288158
AL831947 Gold_partial 7 3340 2 3256 9 12 31163492 31155860
AL832010 Gold_partial 26 4130 1 4012 16 4 77108177 77193834
AL832143 Gold_bad 2 5578 598 334 7 20 58327168 58409177
AL832143 Gold_excellent 2 5578 1 5269 15 6 163722903 163728173
AL832648 Gold_good 12 5532 28 5494 22 17 8539830 8590238
AL832810 Gold_partial 2 3395 1 3358 0 7 63799658 63803023
AL832934 Gold_partial 2 3327 1 3293 7 5 72494545 72491249
AL833252 Gold_good 1 3581 1 3581 22 16 24194913 24198475
AL833563 Gold_bad 4 2452 2 514 0 7 497832 461967
AL833563 Gold_partial 5 2452 514 1776 17 7|NT_079516 134299 99092
AL833722 Gold_partial 5 2998 13 2944 5 11 3364662 3343467
AL834239 Gold_partial 6 2112 2 1458 0 17 38750537 38808323
BX537667 Gold_excellent 2 8250 1 8229 19 13 96749541 96757749
BX538135 Gold_bad 1 2992 1332 538 0 2 12593287 12593825
BX538135 Gold_excellent 2 2992 1 2466 9 2 12603710 12606437
BX538204 Gold_partial 2 6884 1 6720 16 15 64868459 64875179
BX538221 Gold_partial 2 6884 1 6720 16 15 64868459 64875179
BX641035 Gold_partial 34 8150 1 6830 35 1 12074171 12251506
BX641161 Gold_partial 2 4469 1 4341 27 2 237104490 237108826
BX647411 Gold_good 8 2588 1 2563 17 17 79089371 79112001
BX647512 Gold_partial 6 1620 1 1565 7 16 21148346 21580453
BX647655 Gold_partial 3 5323 28 5204 23 13 112007888 112002774
BX647799 Gold_partial 16 6844 1 6774 9 11 10793884 10782910
BX648280 Gold_bad 1 5812 166 45 0 16 88080699 88080744
BX648280 Gold_good 14 5812 2 5726 35 16 29340178 29423235
BX648350 Gold_partial 7 6533 1 5195 4 5 41949997 41967240
BX648557 Gold_partial 3 3621 1 3279 25 16 81907615 81911825
BX648779 Gold_bad 1 4097 3474 198 1 8 64139027 64139225
BX648779 Gold_good 8 4097 2 3917 23 9 21021635 20993625
BX648883 Gold_partial 7 4601 1 4526 8 6 109848311 109829373