Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AL117545 | Gold_excellent | 2 | 2114 | 2 | 2094 | 1 | 12 | 27008997 | 27010844 |
AL136932 | Gold_partial | 25 | 3889 | 12 | 3812 | 1 | 4 | 155083613 | 155135403 |
AL157485 | Gold_partial | 2 | 3261 | 1 | 3225 | 18 | 17 | 78612761 | 78609546 |
AL162007 | Gold_partial | 2 | 2923 | 1 | 2807 | 2 | 1 | 190200759 | 190197953 |
AL713630 | Gold_partial | 2 | 2916 | 1 | 2855 | 8 | 2 | 77291015 | 77288158 |
AL831947 | Gold_partial | 7 | 3340 | 2 | 3256 | 9 | 12 | 31163492 | 31155860 |
AL832010 | Gold_partial | 26 | 4130 | 1 | 4012 | 16 | 4 | 77108177 | 77193834 |
AL832143 | Gold_bad | 2 | 5578 | 598 | 334 | 7 | 20 | 58327168 | 58409177 |
AL832143 | Gold_excellent | 2 | 5578 | 1 | 5269 | 15 | 6 | 163722903 | 163728173 |
AL832648 | Gold_good | 12 | 5532 | 28 | 5494 | 22 | 17 | 8539830 | 8590238 |
AL832810 | Gold_partial | 2 | 3395 | 1 | 3358 | 0 | 7 | 63799658 | 63803023 |
AL832934 | Gold_partial | 2 | 3327 | 1 | 3293 | 7 | 5 | 72494545 | 72491249 |
AL833252 | Gold_good | 1 | 3581 | 1 | 3581 | 22 | 16 | 24194913 | 24198475 |
AL833563 | Gold_bad | 4 | 2452 | 2 | 514 | 0 | 7 | 497832 | 461967 |
AL833563 | Gold_partial | 5 | 2452 | 514 | 1776 | 17 | 7|NT_079516 | 134299 | 99092 |
AL833722 | Gold_partial | 5 | 2998 | 13 | 2944 | 5 | 11 | 3364662 | 3343467 |
AL834239 | Gold_partial | 6 | 2112 | 2 | 1458 | 0 | 17 | 38750537 | 38808323 |
BX537667 | Gold_excellent | 2 | 8250 | 1 | 8229 | 19 | 13 | 96749541 | 96757749 |
BX538135 | Gold_bad | 1 | 2992 | 1332 | 538 | 0 | 2 | 12593287 | 12593825 |
BX538135 | Gold_excellent | 2 | 2992 | 1 | 2466 | 9 | 2 | 12603710 | 12606437 |
BX538204 | Gold_partial | 2 | 6884 | 1 | 6720 | 16 | 15 | 64868459 | 64875179 |
BX538221 | Gold_partial | 2 | 6884 | 1 | 6720 | 16 | 15 | 64868459 | 64875179 |
BX641035 | Gold_partial | 34 | 8150 | 1 | 6830 | 35 | 1 | 12074171 | 12251506 |
BX641161 | Gold_partial | 2 | 4469 | 1 | 4341 | 27 | 2 | 237104490 | 237108826 |
BX647411 | Gold_good | 8 | 2588 | 1 | 2563 | 17 | 17 | 79089371 | 79112001 |
BX647512 | Gold_partial | 6 | 1620 | 1 | 1565 | 7 | 16 | 21148346 | 21580453 |
BX647655 | Gold_partial | 3 | 5323 | 28 | 5204 | 23 | 13 | 112007888 | 112002774 |
BX647799 | Gold_partial | 16 | 6844 | 1 | 6774 | 9 | 11 | 10793884 | 10782910 |
BX648280 | Gold_bad | 1 | 5812 | 166 | 45 | 0 | 16 | 88080699 | 88080744 |
BX648280 | Gold_good | 14 | 5812 | 2 | 5726 | 35 | 16 | 29340178 | 29423235 |
BX648350 | Gold_partial | 7 | 6533 | 1 | 5195 | 4 | 5 | 41949997 | 41967240 |
BX648557 | Gold_partial | 3 | 3621 | 1 | 3279 | 25 | 16 | 81907615 | 81911825 |
BX648779 | Gold_bad | 1 | 4097 | 3474 | 198 | 1 | 8 | 64139027 | 64139225 |
BX648779 | Gold_good | 8 | 4097 | 2 | 3917 | 23 | 9 | 21021635 | 20993625 |
BX648883 | Gold_partial | 7 | 4601 | 1 | 4526 | 8 | 6 | 109848311 | 109829373 |