Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AL713800 | Gold_bad | 2 | 1486 | 1 | 1486 | 47 | 22 | 21571967 | 21573527 |
BX538066 | Gold_dubious | 6 | 1482 | 1 | 1458 | 41 | 14 | 104777318 | 104024904 |
BX538077 | Gold_dubious | 7 | 1529 | 2 | 1528 | 34 | 14 | 104849768 | 104024901 |
BX538118 | Gold_partial | 4 | 1663 | 529 | 1135 | 12 | 14 | 104181093 | 104179352 |
BX538126 | Gold_bad | 17 | 1751 | 1 | 1751 | 69 | 14 | 104801730 | 104207111 |
BX538217 | Gold_dubious | 5 | 3657 | 1 | 3636 | 56 | 22 | 20966485 | 20962867 |
BX640619 | Gold_partial | 4 | 1646 | 517 | 1129 | 13 | 14 | 104181094 | 104179361 |
BX640620 | Gold_bad | 7 | 1601 | 1 | 1601 | 51 | 14 | 105190872 | 104179353 |
BX640621 | Gold_bad | 7 | 1582 | 1 | 1582 | 79 | 14 | 104939188 | 104179360 |
BX640622 | Gold_bad | 9 | 1639 | 1 | 1638 | 65 | 14 | 104663879 | 104179353 |
BX640623 | Gold_dubious | 7 | 1387 | 17 | 1356 | 28 | 14 | 104762875 | 104081084 |
BX640624 | Gold_bad | 6 | 1609 | 1 | 1609 | 54 | 14 | 104787922 | 104145133 |
BX640625 | Gold_dubious | 7 | 1551 | 1 | 1551 | 41 | 14 | 104613727 | 104024901 |
BX640626 | Gold_dubious | 9 | 1565 | 1 | 1492 | 43 | 14 | 104613727 | 104145137 |
BX640627 | Gold_dubious | 7 | 1625 | 1 | 1625 | 29 | 14 | 104524485 | 104179360 |
BX640710 | Gold_dubious | 7 | 1542 | 2 | 1522 | 31 | 14 | 104939205 | 104024904 |
BX640724 | Gold_dubious | 13 | 1736 | 2 | 1735 | 48 | 14 | 104443401 | 104207115 |
BX640822 | Gold_bad | 9 | 1582 | 2 | 1581 | 53 | 14 | 104490608 | 104024900 |
BX640824 | Gold_bad | 9 | 1578 | 4 | 1565 | 57 | 14 | 104849766 | 104062356 |
BX640847 | Gold_dubious | 6 | 1566 | 2 | 1350 | 23 | 14 | 104443408 | 104145135 |
BX640853 | Gold_dubious | 10 | 1634 | 2 | 1609 | 43 | 14 | 104966022 | 104179354 |
BX640854 | Gold_dubious | 8 | 1564 | 2 | 1527 | 31 | 14 | 104966022 | 104024906 |
BX640874 | Gold_dubious | 7 | 1595 | 2 | 1594 | 35 | 14 | 104663873 | 104081090 |
BX640947 | Gold_bad | 10 | 1623 | 2 | 1639 | 54 | 14 | 104697409 | 104154011 |
BX641141 | Gold_good | 5 | 3106 | 2 | 3105 | 15 | 22 | 20977087 | 20988611 |
BX647160 | Gold_good | 10 | 1986 | 4 | 1980 | 25 | 14 | 104898397 | 104291997 |
BX647315 | Gold_bad | 8 | 1537 | 1 | 1536 | 51 | 6 | 31429148 | 31425845 |
BX648082 | Gold_good | 9 | 1967 | 4 | 1951 | 19 | 14 | 104849768 | 104292005 |
BX648616 | Gold_dubious | 6 | 1155 | 1 | 1155 | 31 | 14 | 104377784 | 104145802 |
BX648874 | Gold_dubious | 7 | 1965 | 3 | 1963 | 34 | 14 | 104849768 | 104291998 |