Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AL713800 Gold_bad 2 1486 1 1486 47 22 21571967 21573527
BX538066 Gold_dubious 6 1482 1 1458 41 14 104777318 104024904
BX538077 Gold_dubious 7 1529 2 1528 34 14 104849768 104024901
BX538118 Gold_partial 4 1663 529 1135 12 14 104181093 104179352
BX538126 Gold_bad 17 1751 1 1751 69 14 104801730 104207111
BX538217 Gold_dubious 5 3657 1 3636 56 22 20966485 20962867
BX640619 Gold_partial 4 1646 517 1129 13 14 104181094 104179361
BX640620 Gold_bad 7 1601 1 1601 51 14 105190872 104179353
BX640621 Gold_bad 7 1582 1 1582 79 14 104939188 104179360
BX640622 Gold_bad 9 1639 1 1638 65 14 104663879 104179353
BX640623 Gold_dubious 7 1387 17 1356 28 14 104762875 104081084
BX640624 Gold_bad 6 1609 1 1609 54 14 104787922 104145133
BX640625 Gold_dubious 7 1551 1 1551 41 14 104613727 104024901
BX640626 Gold_dubious 9 1565 1 1492 43 14 104613727 104145137
BX640627 Gold_dubious 7 1625 1 1625 29 14 104524485 104179360
BX640710 Gold_dubious 7 1542 2 1522 31 14 104939205 104024904
BX640724 Gold_dubious 13 1736 2 1735 48 14 104443401 104207115
BX640822 Gold_bad 9 1582 2 1581 53 14 104490608 104024900
BX640824 Gold_bad 9 1578 4 1565 57 14 104849766 104062356
BX640847 Gold_dubious 6 1566 2 1350 23 14 104443408 104145135
BX640853 Gold_dubious 10 1634 2 1609 43 14 104966022 104179354
BX640854 Gold_dubious 8 1564 2 1527 31 14 104966022 104024906
BX640874 Gold_dubious 7 1595 2 1594 35 14 104663873 104081090
BX640947 Gold_bad 10 1623 2 1639 54 14 104697409 104154011
BX641141 Gold_good 5 3106 2 3105 15 22 20977087 20988611
BX647160 Gold_good 10 1986 4 1980 25 14 104898397 104291997
BX647315 Gold_bad 8 1537 1 1536 51 6 31429148 31425845
BX648082 Gold_good 9 1967 4 1951 19 14 104849768 104292005
BX648616 Gold_dubious 6 1155 1 1155 31 14 104377784 104145802
BX648874 Gold_dubious 7 1965 3 1963 34 14 104849768 104291998