Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AL049266 Gold_bad 1 2940 2524 419 5 2 170810512 170810930
AL049266 Gold_good 1 2940 4 2520 10 2 187252843 187250322
AL049333 Gold_bad 1 1785 1632 184 1 12 7967688 7967502
AL049333 Gold_good 1 1785 31 1605 10 3 32565276 32563671
AL049378 Gold_bad 1 1752 1103 650 0 19 5203106 5202451
AL049378 Gold_partial 1 1752 2 1076 0 5 72293213 72294289
AL050270 Gold_bad 1 3256 3034 223 1 15 62961841 62961585
AL050270 Gold_excellent 1 3256 4 3050 12 17 61972513 61975559
AL080060 Gold_bad 1 935 114 91 0 2 172576276 172576367
AL080060 Gold_good 1 935 182 883 7 9 547801 548685
AL080077 Gold_bad 1 1418 1317 102 4 22 40056158 40056318
AL080077 Gold_good 1 1418 3 1321 6 8 74695445 74694126
AL080107 Gold_bad 1 1566 1 211 0 4 95948713 95948923
AL080107 Gold_excellent 1 1566 205 1362 1 2 163367513 163366149
AL080170 Gold_bad 1 2238 1 278 0 7 39403929 39404206
AL080170 Gold_good 5 2238 274 1964 15 1 244921284 244938305
AL096729 Gold_bad 1 2393 1860 534 2 19 62605193 62605726
AL096729 Gold_excellent 1 2393 2 1859 5 6 52711752 52709895
AL110125 Gold_bad 1 1651 1 438 2 10 71036945 71037382
AL110125 Gold_excellent 1 1651 433 1218 2 1 202748259 202749477
AL110296 Gold_bad 1 1802 2 50 0 17 28048427 28048476
AL110296 Gold_bad 5 1802 49 1112 1 17 28048431 28046744
AL110296 Gold_excellent 1 1802 1154 658 0 3 65299831 65299173
AL117549 Gold_bad 1 2109 1 553 0 2 45764709 45764157
AL117549 Gold_excellent 1 2109 549 1561 4 8 17171692 17173255
AL117613 Gold_bad 1 2307 1 1002 4 4 160833349 160834349
AL117613 Gold_good 1 2307 990 1334 9 15 76508283 76509613
AL122070 Gold_bad 1 2587 2192 396 0 5 172363106 172362708
AL122070 Gold_excellent 1 2587 1 2195 6 4 41899837 41902031
AL133652 Gold_bad 3 3073 2592 482 2 8 7743007 7758729
AL133652 Gold_excellent 1 3073 1 2596 2 1 89691736 89689141
AL136790 Gold_bad 1 895 1 60 0 7 110181164 110181105
AL136790 Gold_excellent 1 895 57 839 0 17 20596223 20595385
AL136881 Gold_bad 10 3317 1 1372 0 9 87422906 87445866
AL136881 Gold_excellent 8 3317 1237 2081 1 9|NT_079536 73549 91845
AL137476 Gold_bad 1 5240 5292 0 0 X 117283231 117283261
AL137476 Gold_excellent 1 5240 1 5240 8 20 5476948 5471714
AL137623 Gold_bad 1 605 456 150 0 6 17693604 17693452
AL137623 Gold_partial 3 605 1 436 4 9 91181655 91188501
AL137654 Gold_bad 1 2160 1 259 1 3 52247977 52247720
AL137654 Gold_excellent 1 2160 254 1907 0 2 111512849 111510930
AL137671 Gold_bad 1 2029 1723 136 0 3 52415200 52415336
AL137671 Gold_bad 1 2029 1851 179 0 9 126833676 126833855
AL137671 Gold_excellent 5 2029 1 1727 0 3 52412405 52415769
AL137686 Gold_bad 1 3981 1 167 2 15 60268446 60268613
AL137686 Gold_excellent 12 3981 141 3841 13 15 32393748 32387328
AL137733 Gold_bad 1 3884 3827 58 0 7 4857132 4857190
AL137733 Gold_good 18 3884 1 3820 20 1 240211770 240166354
AL137737 Gold_bad 1 4109 1 556 0 22 40722827 40723383
AL137737 Gold_excellent 13 4109 554 3556 11 5 6674340 6652093
AL137751 Gold_bad 1 3638 1 246 0 3 123662005 123662250
AL137751 Gold_excellent 4 3638 239 3400 5 11 109645045 109637821
AL157434 Gold_bad 1 3550 1 674 0 20 41776053 41775380
AL157434 Gold_excellent 12 3550 670 2881 1 12 121421395 121394961
AL162006 Gold_bad 1 1919 1305 615 1 7 94961525 94962156
AL162006 Gold_excellent 1 1919 1 1310 0 11 118775855 118774546
AL162013 Gold_bad 1 1739 1244 495 1 19 55854829 55854335
AL162013 Gold_excellent 4 1739 1 1249 0 3 128070090 128074483
AL162082 Gold_bad 1 3413 2878 549 2 12 55413774 55413211
AL162082 Gold_excellent 8 3413 1 2881 10 17 21081148 21066290
AL359938 Gold_bad 1 2386 3 371 0 14 68501312 68501683
AL359938 Gold_excellent 13 2386 370 2017 0 19 52613693 52598193
AL359945 Gold_bad 1 2288 2252 37 0 19 5642638 5642676
AL359945 Gold_partial 8 2288 46 2213 3 17 5560050 5547135
AL713746 Gold_bad 2 4935 2511 2437 1 X 132938018 132934668
AL713746 Gold_excellent 1 4935 13 2480 8 1 46198133 46200609
AL713779 Gold_bad 3 2759 2305 455 0 16 3024390 3023077
AL713779 Gold_excellent 1 2759 1 2311 8 3 129589801 129592111
AL831914 Gold_bad 1 950 565 386 1 19 52199011 52199396
AL831914 Gold_excellent 1 950 1 605 1 10 71130593 71129989
AL832142 Gold_bad 2 7225 5127 2099 4 8 8770521 8768396
AL832142 Gold_excellent 2 7225 1 5132 2 1 233415718 233410300
AL832143 Gold_bad 2 5578 598 334 7 20 58327168 58409177
AL832143 Gold_excellent 2 5578 1 5269 15 6 163722903 163728173
AL832186 Gold_bad 1 2011 2 142 2 1 35086408 35086267
AL832186 Gold_excellent 15 2011 127 1885 5 19 6690733 6702495
AL832188 Gold_bad 1 1816 1 35 1 1 143026020 143026055
AL832188 Gold_excellent 1 1816 31 1786 2 1 148482975 148481190
AL832221 Gold_bad 1 3117 1 144 0 2 243284809 243284666
AL832221 Gold_excellent 4 3117 142 2976 1 2 202563236 202555115
AL832223 Gold_bad 2 3086 1 831 0 17 30993170 30994172
AL832223 Gold_excellent 10 3086 831 2256 2 11 125429068 125412948
AL832395 Gold_bad 6 4905 1 519 0 2 144097775 144218940
AL832395 Gold_excellent 8 4905 517 4389 2 3 153453637 153504478
AL832581 Gold_bad 1 4977 53 343 2 17 43458163 43458505
AL832581 Gold_good 2 4977 384 4593 38 13 30897716 30889755
AL832587 Gold_bad 1 5289 4747 543 1 7 150547070 150546524
AL832587 Gold_excellent 10 5289 1 4751 12 19 19005348 18964732
AL832738 Gold_bad 14 5303 3 2090 4 22 23323668 23348655
AL832738 Gold_partial 1 5303 2196 3108 2 6 2886136 2889264
AL833078 Gold_bad 2 4681 4125 585 9 5 21546845 21663089
AL833078 Gold_excellent 1 4681 28 4341 5 10 116782526 116786865
AL833278 Gold_bad 1 6152 5828 325 0 15 99769179 99769510
AL833278 Gold_excellent 10 6152 1 5832 7 X 19346084 19292916
AL833320 Gold_bad 1 4713 3684 533 0 8 923911 924444
AL833320 Gold_bad 1 4713 4217 497 0 8 915452 915960
AL833320 Gold_excellent 24 4713 1 3685 0 1 12095206 12250202
AL833490 Gold_bad 1 4075 3970 116 2 14 104716477 104716592
AL833490 Gold_excellent 1 4075 1 3969 4 20 14586719 14590690
AL833498 Gold_bad 1 1984 1 676 5 2 208701114 208701794
AL833498 Gold_excellent 1 1984 691 1294 0 16 74262194 74260901
AL833563 Gold_bad 4 2452 2 514 0 7 497832 461967
AL833563 Gold_partial 5 2452 514 1776 17 7|NT_079516 134299 99092
AL833727 Gold_bad 1 3522 3229 306 2 12 6927598 6927916
AL833727 Gold_good 9 3522 13 3279 19 18 12692655 12674314
AL833897 Gold_bad 1 2625 1 809 3 8 124223062 124222254
AL833897 Gold_excellent 1 2625 794 1832 3 3 124653876 124652044
AL833939 Gold_bad 1 4221 2 36 0 5 1882359 1882395
AL833939 Gold_excellent 8 4221 58 4164 7 3 9829931 9852999
AL834169 Gold_bad 2 3222 2197 1025 5 1 16327600 16325835
AL834169 Gold_good 17 3222 1 2516 18 1 16630343 16661938
AL834172 Gold_bad 1 639 562 78 0 6 31602455 31602355
AL834172 Gold_good 4 639 1 569 5 1 6210279 6215372
AL834415 Gold_bad 1 2656 1879 777 16 4 185114344 185113580
AL834415 Gold_good 5 2656 1 1913 6 19 21056811 21092861
AL834444 Gold_bad 8 7126 25 3524 0 17 58728969 58750116
AL834444 Gold_excellent 6 7126 3595 3532 9 21 32934866 32921470
AL834470 Gold_bad 1 2588 2553 48 0 13 80062509 80062571
AL834470 Gold_partial 14 2588 13 2431 0 11 62269624 62257580
AL834489 Gold_bad 1 3690 1 314 0 12 48387569 48387256
AL834489 Gold_excellent 9 3690 314 3377 5 5 175939992 175934636
AL834518 Gold_bad 1 2455 2211 245 0 1 151171166 151170922
AL834518 Gold_excellent 7 2455 1 2216 0 14 21331491 21336789
BX537485 Gold_bad 1 4392 4315 59 2 2 201949417 201949476
BX537485 Gold_partial 1 4392 1 4262 5 12 22532704 22528443
BX537503 Gold_bad 1 3183 1 179 0 4 187960240 187960418
BX537503 Gold_excellent 1 3183 172 3012 5 2 190630871 190627861
BX537564 Gold_bad 1 6324 6249 76 3 1 232308720 232308644
BX537564 Gold_excellent 1 6324 1 6252 13 1 202455097 202448846
BX537589 Gold_bad 1 2924 2397 506 1 16 15763950 15763445
BX537589 Gold_excellent 1 2924 1 2421 5 6 33291084 33288664
BX537628 Gold_bad 1 2015 1 55 2 17 19517695 19517750
BX537628 Gold_bad 1 2015 174 132 1 5 71230815 71230947
BX537628 Gold_partial 1 2015 301 1715 2 16 48352314 48350598
BX537721 Gold_bad 1 10055 5275 4773 12 14 55752486 55747714
BX537721 Gold_excellent 14 10055 1 5197 17 5 79116273 79216425
BX537725 Gold_bad 1 1712 1566 147 0 1 88739599 88739746
BX537725 Gold_excellent 7 1712 1 1570 1 X 68376663 68372752
BX537739 Gold_bad 1 2515 1 497 1 6 43196826 43197322
BX537739 Gold_excellent 1 2515 490 2026 4 4 71662233 71664258
BX537750 Gold_bad 1 3491 3434 58 0 9 127287211 127287269
BX537750 Gold_excellent 2 3491 1 3437 6 22 38963126 38966583
BX537789 Gold_bad 1 3007 1522 1486 1 2 64200709 64199224
BX537789 Gold_excellent 1 3007 1 1525 1 8 22197668 22199192
BX537809 Gold_bad 1 1599 1383 217 0 6 86316852 86316634
BX537809 Gold_excellent 1 1599 1 1383 5 11 104138812 104137430
BX537818 Gold_bad 1 2422 2303 120 0 6 44268355 44268475
BX537818 Gold_excellent 1 2422 1 2306 4 X 145545222 145547528
BX537822 Gold_bad 2 2108 1958 151 0 12 10974895 10976190
BX537822 Gold_excellent 2 2108 1 1961 3 10 115176429 115190870
BX537842 Gold_bad 1 5105 4380 726 10 10 50937416 50936687
BX537842 Gold_excellent 1 5105 7 4425 5 14 35872073 35867650
BX537892 Gold_bad 2 3113 1 702 0 9 64405566 64404109
BX537892 Gold_excellent 1 3113 698 2414 7 22 41787776 41790187
BX537995 Gold_bad 1 5583 5430 154 0 1 32904673 32904519
BX537995 Gold_excellent 1 5583 1 5435 21 10 32923359 32928791
BX538094 Gold_bad 2 7239 4044 3196 18 10 18715866 18719078
BX538094 Gold_excellent 6 7239 2 4046 2 3 42602739 42630859
BX538120 Gold_bad 1 2012 1169 286 2 10 44706948 44707234
BX538120 Gold_bad 1 2012 1939 74 0 10 27490014 27489941
BX538120 Gold_partial 2 2012 2 1169 1 10 44690636 44708142
BX538215 Gold_bad 8 5798 2 2845 14 6 150098656 150077428
BX538215 Gold_partial 2 5798 2933 2866 10 15 66140515 66146322
BX538265 Gold_bad 1 5807 1 2722 2 5 178403272 178405993
BX538265 Gold_excellent 1 5807 2720 3088 4 19 52383329 52386434
BX538289 Gold_bad 1 4703 1 138 3 19 2290590 2290452
BX538289 Gold_excellent 5 4703 121 4583 11 5 95308430 95294877
BX538310 Gold_bad 1 4240 4196 45 0 11 57094542 57094498
BX538310 Gold_good 1 4240 1 4201 56 4 151884160 151879961
BX538323 Gold_bad 1 2416 2 968 3 17 7139981 7140948
BX538323 Gold_excellent 1 2416 968 1449 2 22 37326111 37324661
BX640632 Gold_bad 1 11453 7870 3512 33 3 188087642 188091153
BX640632 Gold_bad 2 11453 11369 83 1 1 154261441 154261529
BX640632 Gold_partial 22 11453 1 4772 7 15 79382373 79339249
BX640651 Gold_bad 1 5503 4969 535 20 19 47066788 47067323
BX640651 Gold_good 6 5503 1 5031 12 15 38996191 38984035
BX640664 Gold_bad 1 4329 3497 833 1 1 177127751 177128583
BX640664 Gold_excellent 1 4329 1 3501 13 9 74753322 74756816
BX640781 Gold_bad 1 3181 2381 807 8 11 46662939 46663744
BX640781 Gold_good 5 3181 20 2480 19 13 111785016 111779933
BX640810 Gold_bad 1 3006 2647 363 1 4 71571142 71571506
BX640810 Gold_good 1 3006 4 2648 14 2 209386652 209389296
BX640830 Gold_bad 1 2662 1432 1231 1 8 37969160 37970391
BX640830 Gold_excellent 1 2662 1 1432 2 10 10665478 10666908
BX640832 Gold_bad 2 3592 2 152 0 9 131426668 131425627
BX640832 Gold_excellent 1 3592 156 3437 4 11 61931964 61935400
BX640849 Gold_bad 1 2865 1 603 3 1 151016924 151016319
BX640849 Gold_excellent 5 2865 600 2265 3 12 119619893 119614221
BX640852 Gold_bad 8 4817 2459 2359 20 6 42894509 42904434
BX640852 Gold_partial 1 4817 43 2396 5 7 122876073 122878468
BX640894 Gold_bad 1 3918 1 1283 5 X 70395518 70396800
BX640894 Gold_excellent 1 3918 1281 2638 10 4 751119 753760
BX640944 Gold_bad 1 3206 3147 60 0 1 36074031 36074099
BX640944 Gold_good 1 3206 1 3150 17 6 158746400 158749553
BX640945 Gold_bad 1 8166 5048 3119 19 5 80792686 80795821
BX640945 Gold_partial 7 8166 1 4959 5 11 61397019 61410065
BX640992 Gold_bad 6 4362 2 2065 11 12 10973103 11011001
BX640992 Gold_partial 8 4362 2212 2151 5 6 49758935 49741924
BX641081 Gold_bad 1 2739 1 73 0 7 141263380 141263308
BX641081 Gold_excellent 1 2739 70 2670 8 1 198542606 198545275
BX647181 Gold_bad 1 2967 18 979 11 6 42198007 42198982
BX647181 Gold_good 1 2967 864 2101 16 4 140601153 140599056
BX647207 Gold_bad 2 3086 1 831 0 17 30993170 30994172
BX647207 Gold_excellent 10 3086 831 2256 2 11 125429068 125412948
BX647356 Gold_bad 6 4328 13 2048 2 12 54677321 54685340
BX647356 Gold_partial 6 4328 2081 2228 10 19 8375322 8361283
BX647595 Gold_bad 2 9986 5137 4850 36 7 78777 70546
BX647595 Gold_good 4 9986 1 5102 9 12 40786028 40763356
BX647690 Gold_bad 1 3736 3556 181 1 1 604494 604675
BX647690 Gold_good 3 3736 1 3570 16 9 35526793 35537728
BX647721 Gold_bad 1 4273 1 656 4 6 142516401 142517054
BX647721 Gold_good 2 4273 477 3797 25 10 94961541 95002778
BX647729 Gold_bad 1 1499 1 761 4 7 43754129 43754889
BX647729 Gold_good 1 1499 712 788 4 19 6135055 6135867
BX647783 Gold_bad 1 982 630 296 0 X 147266362 147266067
BX647783 Gold_partial 5 982 2 643 2 17 76780566 76800439
BX647792 Gold_bad 1 1048 2 343 1 1 142412249 142411907
BX647792 Gold_good 3 1048 345 704 6 1 142766543 142771220
BX647833 Gold_bad 5 3751 1 614 3 1 114536897 114525558
BX647833 Gold_excellent 8 3751 608 3144 9 3 198809916 198837688
BX647842 Gold_bad 1 6732 30 37 0 6 37712306 37712270
BX647842 Gold_excellent 17 6732 67 6694 10 9 129627870 129651623
BX647888 Gold_bad 1 889 705 114 0 1 159686664 159686777
BX647888 Gold_partial 1 889 1 709 2 9 84284003 84283295
BX647902 Gold_bad 1 2691 2389 303 3 1 35723104 35723407
BX647902 Gold_good 1 2691 1 2377 13 4 141243936 141246309
BX647966 Gold_bad 5 4571 3 785 1 7 152976159 153655742
BX647966 Gold_partial 19 4571 923 3649 18 7 153911217 154077735
BX648175 Gold_bad 1 4094 72 219 2 3 159734283 159734065
BX648175 Gold_good 5 4094 291 3875 25 3 9835098 9852085
BX648216 Gold_bad 7 4266 1 872 1 9 87604296 87499885
BX648216 Gold_excellent 11 4266 677 3590 6 9|NT_079536 162496 143049
BX648271 Gold_bad 1 4287 4247 39 0 3 49092422 49092384
BX648271 Gold_excellent 8 4287 1 4252 14 1 200946206 200978258
BX648275 Gold_bad 1 4213 1 60 0 1 171072958 171072899
BX648275 Gold_excellent 1 4213 57 4157 8 13 26727317 26723165
BX648280 Gold_bad 1 5812 166 45 0 16 88080699 88080744
BX648280 Gold_good 14 5812 2 5726 35 16 29340178 29423235
BX648304 Gold_bad 1 3866 3832 35 0 9 35672044 35672010
BX648304 Gold_good 2 3866 1 3836 24 9 127042543 127038135
BX648334 Gold_bad 1 1614 1 761 1 16 50075113 50075873
BX648334 Gold_good 1 1614 756 859 11 5 127340724 127339849
BX648362 Gold_bad 1 2933 1839 1094 0 5 139806098 139807192
BX648362 Gold_excellent 3 2933 1 1827 4 5 137104590 137072621
BX648432 Gold_bad 5 5998 3191 2805 4 3 172659164 172639544
BX648432 Gold_partial 5 5998 1 3125 3 19 39437331 39538311
BX648452 Gold_bad 4 2443 1 315 0 14 72966877 72965677
BX648452 Gold_excellent 1 2443 314 2130 2 17 61985169 61983038
BX648500 Gold_bad 1 2314 1 97 0 X 138905913 138905817
BX648500 Gold_excellent 20 2314 98 2217 1 11 65504867 65521930
BX648622 Gold_bad 17 4052 2131 1920 1 12 9072014 9133849
BX648622 Gold_partial 14 4052 22 2090 0 1 32260185 32301700
BX648639 Gold_bad 1 3419 2706 714 15 11 116475168 116474441
BX648639 Gold_good 1 3419 7 2719 1 X 28853141 28850423
BX648752 Gold_bad 3 2991 1 367 0 6 30038690 30044315
BX648752 Gold_excellent 3 2991 362 2630 2 11 195980 192926
BX648779 Gold_bad 1 4097 3474 198 1 8 64139027 64139225
BX648779 Gold_good 8 4097 2 3917 23 9 21021635 20993625
BX648791 Gold_bad 1 5383 4560 824 0 5 67609250 67610076
BX648791 Gold_excellent 1 5383 1 4560 10 1 61187340 61191896
BX648817 Gold_bad 7 3372 2 1378 6 15 63308790 63256249
BX648817 Gold_excellent 3 3372 1373 2000 3 11 129548732 129552351
BX648821 Gold_bad 1 968 645 324 0 5 76115344 76115668
BX648821 Gold_excellent 4 968 1 648 3 11 8897301 8905428
BX648852 Gold_bad 1 3371 3024 348 2 1 604327 604676
BX648852 Gold_excellent 5 3371 1 3028 6 21 34013938 34035473
BX648878 Gold_bad 1 4258 20 34 1 20 23894175 23894209
BX648878 Gold_excellent 9 4258 94 4183 1 6 136578133 136560297
BX648894 Gold_bad 1 2018 1 401 1 12 57684853 57684453
BX648894 Gold_excellent 6 2018 403 1614 1 6 108260322 108237540
BX648912 Gold_bad 2 2600 2 272 0 1 34752998 34749033
BX648912 Gold_excellent 3 2600 272 2329 2 Un|NT_079620 114344 119998
BX648932 Gold_bad 1 6664 6210 455 2 17 75267322 75266866
BX648932 Gold_excellent 1 6664 1 6195 12 2 6134941 6141135
BX648950 Gold_bad 1 6170 1 95 2 12 80785656 80785562
BX648950 Gold_excellent 1 6170 88 6083 7 8 28938282 28944365
BX649015 Gold_bad 1 5238 7 576 3 2 96922620 96923197
BX649015 Gold_excellent 8 5238 583 4656 4 2 241983715 241973923
BX649077 Gold_bad 4 2099 1645 454 2 20 45138595 45137279
BX649077 Gold_excellent 3 2099 1 1654 4 3 47918204 47913145
BX649099 Gold_bad 1 11623 1 4340 10 17 80788696 80793034
BX649099 Gold_excellent 43 11623 4358 7266 9 17 1794739 1760515
BX649156 Gold_bad 1 926 2 54 0 17 80469980 80469927
BX649156 Gold_good 5 926 46 881 13 17|NT_079568 77944 75788
BX649164 Gold_bad 1 9341 1 3397 17 1 17255053 17251657
BX649164 Gold_good 2 9341 3293 6049 33 7 100335053 100342711