Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AL050355 | Gold_good | 6 | 2184 | 38 | 2183 | 10 | 3 | 126508614 | 126486402 |
AL096734 | Gold_excellent | 3 | 3171 | 7 | 3173 | 3 | 1 | 153912451 | 153908479 |
AL117403 | Gold_excellent | 2 | 2106 | 1 | 2106 | 5 | 1 | 153786006 | 153783757 |
AL137511 | Gold_excellent | 8 | 1608 | 1 | 1608 | 3 | 1 | 224145346 | 224149792 |
AL512693 | Gold_partial | 7 | 1785 | 12 | 1761 | 2 | 15 | 98877634 | 98845367 |
AL832384 | Gold_excellent | 2 | 4359 | 1 | 4337 | 10 | 7 | 73857720 | 73852821 |
AL832384 | Gold_excellent | 2 | 4359 | 1 | 4337 | 10 | 7 | 74412865 | 74417765 |
AL832516 | Gold_excellent | 13 | 1842 | 22 | 1831 | 0 | 12 | 131008758 | 131029391 |
AL832582 | Gold_excellent | 12 | 4135 | 50 | 4109 | 4 | 8 | 103832946 | 103795179 |
AL833089 | Gold_excellent | 17 | 4954 | 38 | 4954 | 12 | 15 | 28999841 | 28918852 |
AL833114 | Gold_excellent | 2 | 3474 | 1 | 3458 | 2 | 12 | 63966775 | 63961704 |
BX640937 | Gold_excellent | 4 | 2940 | 1 | 2940 | 4 | 18 | 44538540 | 44638923 |
BX648087 | Gold_excellent | 3 | 6266 | 33 | 6232 | 8 | 5 | 110165218 | 110177073 |
BX648423 | Gold_partial | 3 | 3800 | 54 | 3726 | 12 | 5 | 131884952 | 131880798 |
BX648728 | Gold_excellent | 21 | 6543 | 1 | 6538 | 11 | 19 | 51050808 | 51014053 |
BX648739 | Gold_good | 6 | 2770 | 1 | 2770 | 37 | 19 | 18526465 | 18540385 |