Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AL049450 Gold_excellent 2 1416 1 1416 0 17 38652307 38661521
AL050136 Gold_excellent 2 3462 10 3460 0 8 42999703 43003273
AL050142 Gold_excellent 2 3814 2 3813 6 9 129647791 129651626
AL050159 Gold_good 3 1846 1 1846 15 12 49605091 49612487
AL050195 Gold_excellent 8 2377 1 2377 9 9 121228127 121243187
AL050199 Gold_excellent 2 1779 1 1779 6 11 31416305 31418690
AL050380 Gold_excellent 4 623 1 623 0 7 75544105 75545698
AL050392 Gold_excellent 5 1361 1 1361 1 7 35660730 35686119
AL080078 Gold_excellent 2 1873 4 1873 6 14 59736328 59734447
AL080085 Gold_good 2 919 3 917 4 19 16524144 16521650
AL080189 Gold_excellent 3 696 1 696 1 19 50259251 50266053
AL080209 Gold_excellent 2 4241 1 4241 11 7 136979996 136975747
AL110125 Gold_bad 1 1651 1 438 2 10 71036945 71037382
AL110125 Gold_excellent 1 1651 433 1218 2 1 202748259 202749477
AL110245 Gold_excellent 3 1035 1 1035 0 6 3401514 3268558
AL117410 Gold_excellent 21 4104 1 4104 11 10 29815563 29750283
AL133055 Gold_excellent 2 1868 1 1868 3 7 6405904 6408250
AL133623 Gold_excellent 28 8227 1 8227 5 3 143452406 143346362
AL133648 Gold_excellent 5 4032 1 4032 2 1 3446173 3436697
AL133664 Gold_excellent 4 2787 1 2787 0 1 199068887 199078137
AL136553 Gold_good 2 2661 1 2661 11 22 43167705 43165030
AL136636 Gold_excellent 11 2221 5 2217 8 X 75906806 75838832
AL136724 Gold_good 8 2974 1 2974 12 10 71274871 71254566
AL136741 Gold_excellent 10 3699 1 3699 10 10 68989312 69022745
AL136746 Gold_excellent 19 2309 1 2309 4 19 55013371 55032048
AL136759 Gold_partial 10 3465 1 3419 0 12 42438817 42408758
AL136792 Gold_excellent 21 2086 1 2086 0 7 2343110 2394241
AL136796 Gold_excellent 4 3515 2 3514 2 15 84067868 84032329
AL136913 Gold_excellent 2 1035 2 1031 1 15 73648371 73647258
AL136915 Gold_excellent 5 1958 1 1958 1 20 322775 330505
AL137421 Gold_excellent 25 3288 1 3288 5 X 46050657 46092193
AL137520 Gold_excellent 14 3389 1 3389 4 6 52977093 53011219
AL137529 Gold_excellent 2 2258 1 2258 0 3 142332089 142334383
AL137593 Gold_excellent 4 2372 1 2372 0 5 180769065 180772468
AL137638 Gold_excellent 17 2726 1 2726 2 8 98837965 99005023
AL137661 Gold_excellent 16 2690 1 2690 0 4 80155891 80258982
AL137714 Gold_good 9 3496 1 3496 52 2 114436701 114451760
AL161966 Gold_excellent 3 817 1 817 1 2 32117575 32067431
AL512695 Gold_excellent 2 5262 29 5262 10 18 65659534 65664802
AL713644 Gold_excellent 5 1592 1 1592 3 8 24835601 24831803
AL831929 Gold_excellent 4 2982 1 2982 3 17 1390064 1410862
AL832006 Gold_excellent 2 4842 1 4842 17 1 198666012 198661153
AL832020 Gold_excellent 3 4069 5 4065 6 3 39189837 39185306
AL832047 Gold_excellent 3 4303 6 4297 14 4 39357714 39352928
AL832048 Gold_good 8 4082 1 4082 21 15 92504571 92617061
AL832057 Gold_excellent 2 3108 1 3108 8 3 44920465 44917346
AL832069 Gold_excellent 9 7992 4 7989 26 10 48347116 48328591
AL832091 Gold_excellent 2 4111 1 4111 9 X 55988764 55984056
AL832116 Gold_excellent 10 2204 2 2203 4 X 61872204 61721639
AL832117 Gold_excellent 5 472 2 471 0 22 36314683 36318846
AL832118 Gold_excellent 11 1517 2 1516 0 X 117831834 117813124
AL832154 Gold_excellent 12 2688 2 2687 7 6 17501805 17666000
AL832186 Gold_bad 1 2011 2 142 2 1 35086408 35086267
AL832186 Gold_excellent 15 2011 127 1885 5 19 6690733 6702495
AL832212 Gold_excellent 2 5166 1 5166 6 7 129028766 129023591
AL832213 Gold_excellent 26 6822 1 6822 6 1 244009506 243949343
AL832221 Gold_bad 1 3117 1 144 0 2 243284809 243284666
AL832221 Gold_excellent 4 3117 142 2976 1 2 202563236 202555115
AL832282 Gold_excellent 2 1740 1 1740 1 1 15428437 15430582
AL832328 Gold_excellent 4 4664 2 4663 10 12 29601206 29546539
AL832373 Gold_excellent 20 4784 1 4784 10 11 118016000 118066387
AL832452 Gold_excellent 4 5246 1 5246 4 2 168307736 168318803
AL832461 Gold_excellent 4 3468 2 3466 7 X 130057253 130042680
AL832469 Gold_excellent 3 2681 2 2680 6 11 121508811 121497472
AL832470 Gold_excellent 4 2828 2 2827 3 3 187881384 187897163
AL832481 Gold_excellent 2 2485 1 2485 0 17 37258459 37260994
AL832595 Gold_excellent 12 6289 2 6288 12 8 89296299 89005985
AL832609 Gold_excellent 26 5267 2 5266 21 9 129277038 129385133
AL832615 Gold_good 3 4463 1 4463 37 17 36493614 36500575
AL832639 Gold_excellent 32 5810 2 5809 7 22 35009661 34949218
AL832656 Gold_good 2 3665 1 3665 18 10 114411752 114415853
AL832659 Gold_excellent 6 3386 2 3384 2 2 192745405 192755791
AL832690 Gold_excellent 2 2937 2 2936 11 6 166658147 166655204
AL832708 Gold_good 2 3328 3 3326 14 7 94830907 94827554
AL832715 Gold_excellent 14 2953 5 2953 6 X 148377552 148481814
AL832750 Gold_excellent 14 1972 1 1971 3 12 8901180 8920620
AL832783 Gold_excellent 17 5951 3 5949 12 3 199013708 199095584
AL832794 Gold_good 4 3007 1 3007 16 22 45299725 45292549
AL832925 Gold_excellent 10 3128 1 3128 9 10 126205912 126249427
AL832955 Gold_excellent 4 3459 1 3459 5 7 87524183 87517774
AL833120 Gold_excellent 7 1659 2 1658 4 2 211069910 211088834
AL833137 Gold_excellent 5 2991 1 2991 5 7 107770698 107763494
AL833150 Gold_good 3 1960 1 1959 17 19 60245069 60242291
AL833156 Gold_excellent 2 1959 2 1958 4 6 17398104 17402145
AL833185 Gold_excellent 3 3395 1 3395 7 17 5287945 5283397
AL833226 Gold_excellent 7 3854 1 3854 5 10 116271474 116289055
AL833304 Gold_excellent 22 8790 1 8790 10 10 123418729 123678642
AL833315 Gold_excellent 11 4988 1 4988 9 17 63383373 63328964
AL833319 Gold_excellent 17 6793 1 6792 6 X 133360201 133422041
AL833432 Gold_excellent 6 2787 1 2787 5 14 19727713 19667426
AL833456 Gold_excellent 3 3735 1 3735 11 7 78700072 78704352
AL833489 Gold_excellent 8 4702 1 4702 3 22 28009024 28020880
AL833511 Gold_excellent 20 3921 2 3920 8 2 219778219 219821954
AL833517 Gold_excellent 7 2867 1 2867 7 17 37618853 37596631
AL833547 Gold_good 6 7281 1 7281 35 4 120268815 120441219
AL833567 Gold_excellent 6 4724 1 4724 9 2 210762068 210801379
AL833570 Gold_excellent 29 4448 1 4448 3 17 7433217 7419518
AL833571 Gold_excellent 31 4471 1 4471 4 4 185276331 185330634
AL833626 Gold_excellent 4 3342 1 3342 0 13 19753594 19744717
AL833657 Gold_excellent 11 2497 1 2497 5 6 152500432 152473814
AL833845 Gold_excellent 16 3343 1 3343 2 7 47149344 47055534
AL834156 Gold_excellent 9 3491 1 3490 2 16 66994092 66985744
AL834177 Gold_excellent 5 4287 1 4287 10 4 159670137 159623362
AL834294 Gold_excellent 12 2252 1 2252 5 17 7666080 7675850
AL834330 Gold_good 11 2786 1 2786 21 1 21249359 21280867
AL834526 Gold_excellent 6 1415 1 1415 0 2 234487693 234491126
AL834532 Gold_excellent 4 1395 1 1395 2 19 59652208 59665006
BX537430 Gold_excellent 3 1903 1 1903 2 1 156389889 156393080
BX537519 Gold_excellent 5 5632 4 5629 13 17 45878228 45901273
BX537529 Gold_good 6 2072 2 2071 10 8 11664666 11682263
BX537571 Gold_excellent 2 5992 2 5991 20 6 112035048 112028138
BX537611 Gold_excellent 10 5075 1 5074 9 6 148826119 148853754
BX537615 Gold_excellent 23 3481 1 3481 4 17 31253181 30965178
BX537632 Gold_excellent 2 3371 1 3371 1 12 111356290 111359669
BX537637 Gold_good 13 1595 2 1594 16 2 114436375 114451757
BX537644 Gold_good 4 3563 3 3561 16 12 119345702 119337067
BX537696 Gold_excellent 4 1611 9 1610 2 3 135525750 135517465
BX537774 Gold_excellent 42 5336 1 5336 4 9 127086040 127145417
BX537779 Gold_excellent 15 2363 1 2363 5 3 183912667 183957761
BX537794 Gold_excellent 10 1756 1 1756 2 19 12996394 13070609
BX537824 Gold_excellent 5 2331 1 2331 6 1 143187177 143191313
BX538008 Gold_excellent 30 5719 1 5718 8 2 37272052 37182688
BX538084 Gold_excellent 7 914 1 914 2 6 30563691 30566959
BX538098 Gold_excellent 9 1405 2 1404 3 4 156111435 156102916
BX538117 Gold_excellent 5 3334 1 3334 3 19 50664326 50669692
BX538129 Gold_excellent 14 2021 2 2020 2 4 160171110 160207445
BX538156 Gold_excellent 3 4984 1 4984 18 7 30886782 30893359
BX538198 Gold_excellent 16 3598 1 3598 9 2 220296892 220286642
BX538207 Gold_excellent 5 2066 2 2065 4 12 10973102 10977663
BX538211 Gold_excellent 6 1798 2 1797 4 7 600622 658877
BX538272 Gold_excellent 4 2049 1 2049 3 1 77836611 77832334
BX538334 Gold_excellent 4 3157 1 3157 9 2 118683605 118692551
BX640651 Gold_bad 1 5503 4969 535 20 19 47066788 47067323
BX640651 Gold_good 6 5503 1 5031 12 15 38996191 38984035
BX640696 Gold_excellent 3 5298 1 5298 13 5 149389504 149395469
BX640706 Gold_excellent 7 2660 2 2659 4 19 41870370 41904067
BX640763 Gold_excellent 18 3560 3 3558 12 16 30809703 30822596
BX640795 Gold_excellent 2 5016 1 5016 8 22 48414799 48409358
BX640806 Gold_excellent 4 1659 3 1657 2 5 158576864 158565314
BX640842 Gold_excellent 28 2790 1 2790 7 16 56835007 56871235
BX640862 Gold_excellent 12 2558 1 2558 9 4 38776881 38843732
BX640863 Gold_excellent 4 2901 1 2901 3 6 138636059 138640506
BX640876 Gold_excellent 6 1857 1 1857 7 14 87058348 87069364
BX640887 Gold_excellent 7 5181 1 5181 17 20 37749423 37734668
BX640891 Gold_excellent 16 3134 1 3134 2 1 153340168 153364326
BX640923 Gold_good 13 5587 2 5586 23 1 201662967 201700762
BX640985 Gold_excellent 3 3037 2 3036 4 1 16074807 16105720
BX640995 Gold_excellent 7 3424 2 3423 12 5 34088837 34063465
BX640996 Gold_excellent 2 2652 7 2646 7 11 22611682 22608918
BX640999 Gold_excellent 42 7280 2 7279 10 2 216503333 216428123
BX641012 Gold_excellent 17 3032 2 3031 2 4 111856254 111942183
BX641066 Gold_excellent 6 5543 2 5542 11 X 55225698 55278318
BX641154 Gold_excellent 3 5492 1 5492 6 3 130432282 130426669
BX647081 Gold_excellent 7 2510 3 2508 8 17 33905765 33883633
BX647085 Gold_excellent 5 1962 1 1962 4 12 10973180 10977663
BX647111 Gold_excellent 5 4682 1 4681 16 15 73366969 73359749
BX647136 Gold_excellent 13 3393 1 3393 2 1 152159979 152151567
BX647141 Gold_excellent 4 1630 1 1630 6 5 10343560 10332135
BX647144 Gold_excellent 3 2696 1 2696 3 16 74980305 74985538
BX647147 Gold_excellent 4 4223 1 4223 14 13 28579018 28574775
BX647152 Gold_excellent 5 4265 1 4265 8 11 5670595 5649144
BX647174 Gold_good 6 2501 1 2501 13 6 31232597 31237801
BX647202 Gold_excellent 26 4686 1 4686 3 13 75467738 75416794
BX647217 Gold_excellent 10 2693 1 2693 6 2 178280043 178291122
BX647219 Gold_excellent 2 3322 1 3322 5 12 48550540 48546954
BX647237 Gold_excellent 11 3629 1 3629 7 3 188330438 188272787
BX647242 Gold_bad 1 6202 5142 1061 1 4 44618458 44619518
BX647242 Gold_excellent 17 6202 1 5147 16 4 44595986 44621939
BX647291 Gold_excellent 11 1846 1 1846 5 19 54095428 54118337
BX647292 Gold_good 2 1945 1 1945 10 X 1301506 1299554
BX647292 Gold_good 2 1945 1 1945 10 Y 1301506 1299554
BX647306 Gold_excellent 4 2179 1 2179 4 1 85164793 85154525
BX647329 Gold_excellent 19 2324 1 2324 3 12 9159782 9111577
BX647344 Gold_excellent 9 2909 1 2909 2 12 56488742 56477429
BX647347 Gold_good 9 1163 1 1163 5 12 14847677 14834708
BX647355 Gold_excellent 2 5430 1 5430 6 1 117757998 117752490
BX647356 Gold_bad 6 4328 13 2048 2 12 54677321 54685340
BX647356 Gold_partial 6 4328 2081 2228 10 19 8375322 8361283
BX647396 Gold_good 4 2870 1 2870 14 1 152362525 152358677
BX647467 Gold_excellent 28 7733 1 7733 22 6 42620372 42708097
BX647478 Gold_excellent 3 8623 1 8623 11 5 148912743 148902388
BX647505 Gold_excellent 25 3216 1 3216 3 2 233764579 233911790
BX647508 Gold_excellent 2 5179 1 5179 14 12 4279527 4284777
BX647525 Gold_excellent 5 2337 1 2337 1 20 31056729 30997264
BX647549 Gold_good 2 3209 1 3209 16 9 81320509 81316661
BX647563 Gold_excellent 2 1670 1 1670 2 5 81655050 81653214
BX647596 Gold_excellent 6 6155 1 6155 10 5 79371158 79356627
BX647597 Gold_excellent 7 3678 1 3678 9 19 21116667 21162072
BX647601 Gold_excellent 9 1988 1 1987 1 14 19935221 19917314
BX647616 Gold_good 4 2172 1 2171 9 2 50175838 50122023
BX647682 Gold_excellent 12 5537 2 5535 13 3 71100582 70938378
BX647690 Gold_bad 1 3736 3556 181 1 1 604494 604675
BX647690 Gold_good 3 3736 1 3570 16 9 35526793 35537728
BX647691 Gold_excellent 8 3882 1 3881 8 2 186873352 186900559
BX647693 Gold_excellent 7 3170 1 3170 3 2 42487807 42534187
BX647701 Gold_excellent 4 4695 1 4694 6 1 200874029 200890641
BX647713 Gold_excellent 12 2554 2 2552 4 4 88908781 88852885
BX647718 Gold_excellent 6 1385 2 1384 4 19 54095381 54118337
BX647744 Gold_excellent 2 2564 2 2563 0 8 38025838 38018538
BX647763 Gold_excellent 17 3068 2 3067 2 17 74696991 74675602
BX647786 Gold_excellent 5 5097 2 5096 10 4|NT_079512 34993 22202
BX647830 Gold_excellent 3 3177 1 3177 6 11 105485793 105459543
BX647832 Gold_excellent 19 3146 2 3145 3 11 106866262 106734807
BX647840 Gold_excellent 3 5999 29 5999 11 9 111251398 111258169
BX647941 Gold_excellent 3 3455 3 3453 9 1 19246842 19243378
BX648114 Gold_excellent 5 4944 3 4942 4 11 18601922 18592563
BX648166 Gold_excellent 19 3135 1 3135 4 4 68414589 68341576
BX648178 Gold_excellent 24 7692 1 7692 11 5 167162893 167671082
BX648211 Gold_excellent 23 4086 3 4084 8 13 43837083 43908760
BX648217 Gold_excellent 12 2795 3 2791 8 19 17843754 17866981
BX648227 Gold_excellent 2 1740 1 1740 3 14 90239333 90237344
BX648241 Gold_excellent 23 6219 2 6218 12 14 50526583 50461559
BX648243 Gold_good 7 8729 2 8727 81 19 58449938 58423389
BX648308 Gold_excellent 3 3512 1 3512 5 1 200440032 200436323
BX648329 Gold_excellent 4 7542 2 7541 5 5 41556231 41352557
BX648407 Gold_excellent 13 2838 2 2837 2 16 11803061 11739377
BX648410 Gold_excellent 9 1834 1 1834 1 8 33428285 33414267
BX648413 Gold_good 4 2127 1 2127 9 17 75681878 75688190
BX648425 Gold_excellent 16 3314 3 3312 3 18 26934351 26899373
BX648426 Gold_excellent 12 2963 1 2962 2 20 16382045 16247754
BX648429 Gold_excellent 4 3228 2 3226 9 16 75278140 75256697
BX648438 Gold_excellent 8 3117 19 3099 8 9 33125320 33100655
BX648441 Gold_excellent 5 2234 2 2232 6 1 45370100 45222851
BX648443 Gold_excellent 2 2165 11 2155 2 10 116399822 116402019
BX648445 Gold_excellent 17 4738 2 4737 6 13 22351839 22694096
BX648446 Gold_excellent 7 2195 4 2192 2 16 18779419 18769544
BX648447 Gold_excellent 3 2048 2 2047 2 11 118742887 118745671
BX648463 Gold_excellent 9 4479 3 4477 15 12 91691493 91668755
BX648469 Gold_excellent 13 3962 2 3961 7 2 176235459 176139524
BX648485 Gold_excellent 8 2062 2 2060 3 1 151372476 151345635
BX648501 Gold_excellent 3 6782 1 6782 20 9 16202442 16209226
BX648511 Gold_good 2 2774 2 2770 25 6 2969123 2965738
BX648515 Gold_excellent 23 3743 2 3742 4 11 119744865 119897389
BX648538 Gold_excellent 2 2990 1 2989 7 8 22299080 22302130
BX648564 Gold_excellent 16 4123 2 4122 13 10 69210479 69316057
BX648565 Gold_excellent 3 2015 1 2015 3 3 39194685 39185305
BX648585 Gold_excellent 2 4541 1 4541 5 8 65557920 65553370
BX648595 Gold_excellent 10 3557 1 3557 7 8 132947761 132982358
BX648599 Gold_excellent 22 3776 2 3774 8 5 149494619 149461370
BX648609 Gold_excellent 2 2420 1 2420 1 20 40672220 40674650
BX648617 Gold_excellent 9 1773 2 1772 4 16 67644059 67638298
BX648620 Gold_excellent 3 2066 2 2065 2 9 108349670 108341686
BX648706 Gold_excellent 27 5947 1 5947 8 13 47348051 47581729
BX648726 Gold_excellent 44 4639 1 4639 8 3 101966118 101789082
BX648781 Gold_excellent 5 3242 2 3241 4 12 10256783 10266989
BX648796 Gold_excellent 4 4423 1 4423 4 5 66442124 66478974
BX648826 Gold_excellent 5 4414 2 4413 12 20 47270465 47275513
BX648857 Gold_excellent 2 2866 1 2866 3 2 174976724 174973783
BX648863 Gold_excellent 6 3123 2 3122 3 16 66561743 66531034
BX648866 Gold_excellent 11 3033 1 3033 7 16 16128492 16203263
BX648871 Gold_good 4 3243 2 3242 20 12 10973102 10977659
BX648876 Gold_excellent 3 4699 3 4697 11 6 82457994 82451609
BX648883 Gold_partial 7 4601 1 4526 8 6 109848311 109829373
BX648889 Gold_excellent 6 3578 3 3576 5 6 134354359 134290443
BX648961 Gold_excellent 2 5978 1 5978 16 5 172274544 172280750
BX648964 Gold_excellent 2 4451 1 4451 5 10 117485497 117481031
BX649042 Gold_excellent 13 3866 1 3866 5 2 179939464 179899890
BX649055 Gold_excellent 10 3712 1 3712 9 10 112343962 112438009
BX649062 Gold_excellent 3 3260 1 3260 3 1 174048698 174054107
BX649066 Gold_excellent 9 1885 1 1885 5 3 106743829 106698016
BX649089 Gold_excellent 3 3932 1 3932 4 9 97974761 97979184
BX649091 Gold_good 3 2520 1 2520 17 19 51665533 51661601
BX649101 Gold_excellent 7 1062 2 1061 1 X 47501898 47509556
BX649149 Gold_good 2 7914 1 7914 32 13 37905936 37898014
BX649158 Gold_excellent 17 5967 1 5964 15 6 168071654 168123140