Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK022505 | Gold_excellent | 9 | 3122 | 1 | 3122 | 8 | 5 | 1536302 | 1514282 |
AK022528 | Gold_excellent | 18 | 3206 | 1 | 3206 | 3 | 1 | 114599300 | 114558643 |
AK022782 | Gold_excellent | 13 | 1720 | 1 | 1720 | 5 | 2 | 203978937 | 203947873 |
AK022787 | Gold_excellent | 2 | 1407 | 1 | 1407 | 1 | 8 | 126405823 | 126407236 |
AK024479 | Gold_excellent | 5 | 4325 | 1 | 4325 | 5 | 20 | 3668726 | 3662619 |
AK024530 | Gold_excellent | 5 | 1035 | 1 | 1035 | 2 | 3 | 9896935 | 9883399 |
AK024936 | Gold_excellent | 1 | 1928 | 1 | 1937 | 2 | 6 | 1674105 | 1672168 |
AK025321 | Gold_excellent | 1 | 1780 | 1 | 1780 | 5 | 7 | 33665957 | 33667737 |
AK026566 | Gold_excellent | 2 | 543 | 1 | 543 | 1 | X | 114378266 | 114376956 |
AK027145 | Gold_good | 1 | 2044 | 1 | 2044 | 10 | 21 | 38565794 | 38567837 |
AK074222 | Gold_excellent | 9 | 1728 | 1 | 1728 | 1 | 1 | 39732986 | 39720023 |
AK074224 | Gold_excellent | 13 | 2489 | 1 | 2489 | 2 | 22 | 37145352 | 37124753 |
AK074410 | Gold_excellent | 3 | 2179 | 1 | 2179 | 3 | 6 | 290857 | 295703 |
AK074413 | Gold_partial | 1 | 718 | 13 | 706 | 8 | 17 | 40351920 | 40352628 |
AK074469 | Gold_bad | 1 | 1895 | 1427 | 469 | 1 | 8 | 37775939 | 37775469 |
AK074469 | Gold_excellent | 1 | 1895 | 1 | 1426 | 2 | 21 | 26461513 | 26460086 |
AK074470 | Gold_excellent | 1 | 2181 | 1 | 2181 | 1 | 14 | 101799220 | 101801400 |
AK074704 | Gold_excellent | 2 | 1835 | 1 | 1835 | 0 | 9 | 97364036 | 97359492 |
AK074706 | Gold_excellent | 12 | 3635 | 1 | 3635 | 2 | 3 | 129092121 | 129111434 |
AK098303 | Gold_excellent | 1 | 2309 | 1 | 2309 | 1 | 20 | 43428072 | 43425765 |
AK098623 | Gold_excellent | 8 | 1744 | 1 | 1744 | 0 | 6 | 74226353 | 74222839 |
AK127384 | Gold_excellent | 8 | 1744 | 1 | 1744 | 0 | 6 | 74226353 | 74222839 |
AK127990 | Gold_excellent | 2 | 1758 | 1 | 1758 | 5 | 9 | 135876088 | 135877836 |
AK129618 | Gold_excellent | 10 | 1409 | 1 | 1409 | 0 | 11 | 62116693 | 62102435 |
AK131048 | Gold_excellent | 4 | 870 | 1 | 870 | 0 | 19 | 54160378 | 54161947 |
AK131050 | Gold_excellent | 4 | 870 | 1 | 870 | 0 | 19 | 54160378 | 54161947 |