Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK022505 Gold_excellent 9 3122 1 3122 8 5 1536302 1514282
AK022528 Gold_excellent 18 3206 1 3206 3 1 114599300 114558643
AK022782 Gold_excellent 13 1720 1 1720 5 2 203978937 203947873
AK022787 Gold_excellent 2 1407 1 1407 1 8 126405823 126407236
AK024479 Gold_excellent 5 4325 1 4325 5 20 3668726 3662619
AK024530 Gold_excellent 5 1035 1 1035 2 3 9896935 9883399
AK024936 Gold_excellent 1 1928 1 1937 2 6 1674105 1672168
AK025321 Gold_excellent 1 1780 1 1780 5 7 33665957 33667737
AK026566 Gold_excellent 2 543 1 543 1 X 114378266 114376956
AK027145 Gold_good 1 2044 1 2044 10 21 38565794 38567837
AK074222 Gold_excellent 9 1728 1 1728 1 1 39732986 39720023
AK074224 Gold_excellent 13 2489 1 2489 2 22 37145352 37124753
AK074410 Gold_excellent 3 2179 1 2179 3 6 290857 295703
AK074413 Gold_partial 1 718 13 706 8 17 40351920 40352628
AK074469 Gold_bad 1 1895 1427 469 1 8 37775939 37775469
AK074469 Gold_excellent 1 1895 1 1426 2 21 26461513 26460086
AK074470 Gold_excellent 1 2181 1 2181 1 14 101799220 101801400
AK074704 Gold_excellent 2 1835 1 1835 0 9 97364036 97359492
AK074706 Gold_excellent 12 3635 1 3635 2 3 129092121 129111434
AK098303 Gold_excellent 1 2309 1 2309 1 20 43428072 43425765
AK098623 Gold_excellent 8 1744 1 1744 0 6 74226353 74222839
AK127384 Gold_excellent 8 1744 1 1744 0 6 74226353 74222839
AK127990 Gold_excellent 2 1758 1 1758 5 9 135876088 135877836
AK129618 Gold_excellent 10 1409 1 1409 0 11 62116693 62102435
AK131048 Gold_excellent 4 870 1 870 0 19 54160378 54161947
AK131050 Gold_excellent 4 870 1 870 0 19 54160378 54161947