| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK001647 | Gold_bad | 2 | 3424 | 1 | 265 | 0 | 2 | 234770476 | 234773292 |
| AK001647 | Gold_excellent | 28 | 3424 | 204 | 3221 | 1 | 2 | 234756681 | 234681066 |
| AK021423 | Gold_bad | 1 | 1454 | 1192 | 263 | 1 | 14 | 58556728 | 58556990 |
| AK021423 | Gold_partial | 1 | 1454 | 34 | 1158 | 2 | 14 | 58558464 | 58557307 |
| AK022078 | Gold_bad | 1 | 2290 | 15 | 142 | 2 | 7 | 1606702 | 1606844 |
| AK022078 | Gold_good | 1 | 2290 | 154 | 2137 | 10 | 7 | 1608571 | 1606433 |
| AK023315 | Gold_bad | 1 | 1894 | 1811 | 84 | 0 | 12 | 61327863 | 61327955 |
| AK023315 | Gold_excellent | 11 | 1894 | 1 | 1811 | 2 | 12 | 61615197 | 61328481 |
| AK024147 | Gold_bad | 1 | 2620 | 5 | 526 | 9 | 11 | 66745854 | 66745332 |
| AK024147 | Gold_good | 1 | 2620 | 408 | 2213 | 13 | 11 | 66735988 | 66738200 |
| AK024905 | Gold_bad | 1 | 1867 | 2 | 542 | 0 | 13 | 38954243 | 38953702 |
| AK024905 | Gold_bad | 1 | 1867 | 552 | 396 | 7 | 12 | 49610965 | 49610570 |
| AK024905 | Gold_good | 1 | 1867 | 945 | 923 | 4 | 12 | 49611632 | 49612554 |
| AK025044 | Gold_bad | 1 | 2995 | 1 | 476 | 0 | 7 | 107003720 | 107004195 |
| AK025044 | Gold_bad | 1 | 2995 | 477 | 1233 | 5 | 7 | 107001674 | 107002907 |
| AK025044 | Gold_good | 1 | 2995 | 1628 | 1385 | 11 | 7 | 107000616 | 106999215 |
| AK025047 | Gold_bad | 1 | 2673 | 14 | 868 | 11 | 3 | 114640800 | 114639933 |
| AK025047 | Gold_good | 1 | 2673 | 882 | 1807 | 6 | 3 | 114629425 | 114631242 |
| AK025105 | Gold_bad | 1 | 1637 | 1534 | 124 | 4 | 2 | 9414658 | 9414783 |
| AK025105 | Gold_good | 1 | 1637 | 3 | 1561 | 3 | 2 | 9418049 | 9416490 |
| AK026723 | Gold_bad | 1 | 1977 | 1 | 917 | 3 | 7 | 29432362 | 29431447 |
| AK026723 | Gold_good | 1 | 1977 | 918 | 1060 | 6 | 7 | 29429779 | 29430838 |
| AK026952 | Gold_bad | 6 | 2371 | 1 | 853 | 2 | 19 | 18312453 | 18335512 |
| AK026952 | Gold_excellent | 8 | 2371 | 847 | 1525 | 2 | 19 | 18513658 | 18503573 |
| AK055522 | Gold_bad | 1 | 2427 | 1820 | 608 | 26 | X | 47916475 | 47915867 |
| AK055522 | Gold_good | 2 | 2427 | 19 | 1962 | 7 | X | 47912348 | 47918952 |
| AK057855 | Gold_bad | 1 | 1777 | 1688 | 90 | 0 | 3 | 44120283 | 44120372 |
| AK057855 | Gold_partial | 1 | 1777 | 1 | 1668 | 2 | 3 | 44119571 | 44117904 |
| AK090450 | Gold_bad | 1 | 5657 | 27 | 54 | 0 | 9 | 131260216 | 131260269 |
| AK090450 | Gold_excellent | 13 | 5657 | 81 | 5577 | 13 | 9 | 131260224 | 131249155 |
| AK090830 | Gold_bad | 1 | 2712 | 10 | 265 | 6 | 15 | 48496994 | 48497258 |
| AK090830 | Gold_good | 1 | 2712 | 206 | 2507 | 17 | 15 | 48503065 | 48500559 |
| AK090956 | Gold_bad | 2 | 1186 | 1006 | 181 | 0 | 11 | 74382424 | 74386446 |
| AK090956 | Gold_excellent | 4 | 1186 | 1 | 1003 | 3 | 11 | 74371210 | 74279776 |
| AK091338 | Gold_bad | 1 | 2566 | 2543 | 43 | 0 | 1 | 202167562 | 202167604 |
| AK091338 | Gold_excellent | 1 | 2566 | 20 | 2524 | 3 | 1 | 202169383 | 202166860 |
| AK094404 | Gold_bad | 1 | 2176 | 1279 | 898 | 1 | 16 | 3917146 | 3918043 |
| AK094404 | Gold_excellent | 1 | 2176 | 1 | 1286 | 0 | 16 | 3919622 | 3918337 |
| AK096567 | Gold_bad | 1 | 2972 | 1 | 353 | 10 | 1 | 145473161 | 145473509 |
| AK096567 | Gold_good | 2 | 2972 | 354 | 2619 | 5 | 1 | 145442012 | 145439385 |
| AK096600 | Gold_bad | 1 | 2827 | 773 | 76 | 3 | 1 | 148719633 | 148719558 |
| AK096600 | Gold_bad | 2 | 2827 | 1 | 779 | 0 | 19 | 2672361 | 2668155 |
| AK096600 | Gold_excellent | 12 | 2827 | 835 | 1993 | 0 | 1 | 148716033 | 148726549 |
| AK098044 | Gold_bad | 7 | 2624 | 2 | 784 | 13 | 10 | 50967963 | 50951591 |
| AK098044 | Gold_good | 1 | 2624 | 784 | 1841 | 8 | 10 | 51077373 | 51079213 |
| AK123277 | Gold_bad | 1 | 2882 | 1 | 1228 | 8 | 19 | 51201628 | 51202860 |
| AK123277 | Gold_excellent | 1 | 2882 | 1228 | 1655 | 3 | 19 | 51128523 | 51126870 |
| AK124389 | Gold_bad | 1 | 1965 | 1798 | 168 | 0 | 3 | 197986316 | 197986149 |
| AK124389 | Gold_excellent | 9 | 1965 | 1 | 1810 | 1 | 3 | 197939352 | 197984636 |
| AK124403 | Gold_bad | 1 | 2281 | 2063 | 219 | 0 | 16 | 75038156 | 75038374 |
| AK124403 | Gold_excellent | 3 | 2281 | 1 | 2062 | 2 | 16 | 75020610 | 75018224 |
| AK126294 | Gold_bad | 2 | 2525 | 6 | 1224 | 7 | 11 | 129269232 | 129268004 |
| AK126294 | Gold_good | 1 | 2525 | 1219 | 1307 | 4 | 11 | 129270514 | 129271821 |
| AK128367 | Gold_bad | 1 | 3268 | 3016 | 253 | 2 | 22 | 39316340 | 39316088 |
| AK128367 | Gold_good | 1 | 3268 | 1 | 3023 | 20 | 22 | 39312547 | 39315563 |
| AK128499 | Gold_bad | 1 | 3832 | 1 | 72 | 0 | 4 | 657695 | 657766 |
| AK128499 | Gold_excellent | 1 | 3832 | 71 | 3762 | 1 | 4 | 428223 | 424462 |
| AK128532 | Gold_bad | 2 | 3522 | 2394 | 1129 | 1 | 1 | 2353555 | 2350772 |
| AK128532 | Gold_good | 3 | 3522 | 35 | 2359 | 34 | 1 | 2365835 | 2368906 |
| AK131056 | Gold_bad | 1 | 873 | 651 | 223 | 1 | 16 | 75017773 | 75017551 |
| AK131056 | Gold_excellent | 6 | 873 | 1 | 650 | 0 | 16 | 75032439 | 75037639 |
| AK131091 | Gold_bad | 1 | 5087 | 18 | 158 | 1 | 17 | 43786694 | 43786537 |
| AK131091 | Gold_excellent | 16 | 5087 | 176 | 4912 | 2 | 17 | 43786680 | 43800108 |