Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AK001091 | Gold_excellent | 7 | 1737 | 1 | 1737 | 6 | 2 | 11317321 | 11340726 |
AK001500 | Gold_excellent | 6 | 2615 | 1 | 2615 | 5 | 8 | 144796857 | 144791219 |
AK001626 | Gold_excellent | 12 | 2160 | 1 | 2160 | 4 | 5 | 168118874 | 168074126 |
AK002153 | Gold_excellent | 15 | 1768 | 1 | 1768 | 3 | 2 | 184031961 | 183992847 |
AK002203 | Gold_excellent | 16 | 1634 | 1 | 1634 | 1 | 2 | 169861672 | 169924108 |
AK023163 | Gold_excellent | 5 | 2174 | 16 | 2175 | 2 | 3 | 14683425 | 14689166 |
AK023300 | Gold_excellent | 10 | 1667 | 1 | 1667 | 5 | 2 | 110392558 | 110462412 |
AK023317 | Gold_excellent | 2 | 2736 | 1 | 2736 | 4 | 5 | 137829104 | 137972967 |
AK023639 | Gold_excellent | 7 | 2472 | 1 | 2471 | 3 | 6 | 71231088 | 71262995 |
AK025200 | Gold_excellent | 3 | 2176 | 3 | 2186 | 4 | 17 | 37384951 | 37381885 |
AK026247 | Gold_partial | 2 | 1252 | 1 | 1237 | 2 | 17 | 17289440 | 17271826 |
AK027227 | Gold_partial | 2 | 2183 | 1 | 2150 | 8 | 21 | 45423341 | 45421114 |
AK054706 | Gold_excellent | 2 | 2545 | 1 | 2545 | 5 | 11 | 131819109 | 131821742 |
AK055316 | Gold_excellent | 3 | 2200 | 1 | 2200 | 6 | 17 | 44173134 | 44184730 |
AK056509 | Gold_excellent | 16 | 3076 | 1 | 3075 | 5 | 16 | 21128687 | 21081776 |
AK056511 | Gold_excellent | 3 | 2976 | 1 | 2969 | 1 | 2 | 241821248 | 241782096 |
AK057925 | Gold_partial | 4 | 744 | 16 | 729 | 0 | 5 | 133823788 | 133813990 |
AK057984 | Gold_excellent | 2 | 1767 | 1 | 1767 | 1 | 17 | 76161900 | 76156573 |
AK074312 | Gold_excellent | 10 | 2051 | 17 | 2046 | 7 | 3 | 47420927 | 47415794 |
AK074346 | Gold_excellent | 16 | 2764 | 21 | 2760 | 6 | 17 | 73556255 | 73543965 |
AK074347 | Gold_excellent | 10 | 2155 | 21 | 2154 | 3 | 22 | 44883393 | 44902139 |
AK074364 | Gold_excellent | 5 | 2594 | 16 | 2596 | 8 | 19 | 17442337 | 17471207 |
AK074369 | Gold_excellent | 8 | 2098 | 15 | 2098 | 2 | 17 | 4127597 | 4115904 |
AK074373 | Gold_excellent | 9 | 2686 | 1 | 2702 | 7 | 2 | 64753352 | 64793800 |
AK074378 | Gold_excellent | 15 | 2305 | 5 | 2321 | 7 | 1 | 165093292 | 165220294 |
AK091415 | Gold_excellent | 3 | 3057 | 1 | 3057 | 10 | 14 | 102140393 | 102136207 |
AK094252 | Gold_excellent | 2 | 1998 | 1 | 1998 | 5 | 9 | 90947210 | 90943575 |
AK094940 | Gold_excellent | 10 | 3769 | 16 | 3771 | 8 | 6 | 53422082 | 53408975 |
AK095583 | Gold_excellent | 2 | 3604 | 1 | 3602 | 2 | 7 | 73857719 | 73853799 |
AK095583 | Gold_excellent | 2 | 3604 | 1 | 3602 | 2 | 7 | 74412866 | 74416787 |
AK098364 | Gold_excellent | 4 | 1969 | 1 | 1969 | 4 | 10 | 79124534 | 79094975 |
AK098722 | Gold_excellent | 2 | 1308 | 1 | 1308 | 2 | 19 | 5407866 | 5406412 |
AK098728 | Gold_excellent | 3 | 2414 | 1 | 2414 | 1 | 9 | 131231332 | 131235957 |
AK123559 | Gold_good | 5 | 3708 | 14 | 3695 | 34 | 19 | 5862702 | 5866820 |
AK123778 | Gold_excellent | 2 | 2528 | 2 | 2527 | 3 | 17 | 49030390 | 49027818 |
AK124271 | Gold_excellent | 13 | 2010 | 1 | 2001 | 5 | 9 | 131997082 | 131977257 |
AK124777 | Gold_good | 2 | 3638 | 1 | 3612 | 20 | 9 | 131912375 | 131908658 |
AK125109 | Gold_excellent | 5 | 3253 | 5 | 3249 | 6 | 14 | 72756808 | 72750798 |
AK125254 | Gold_excellent | 2 | 2094 | 1 | 2094 | 3 | 17 | 38890072 | 38894110 |
AK127786 | Gold_good | 9 | 3813 | 16 | 3813 | 17 | 3 | 9622712 | 9852088 |
AK128479 | Gold_excellent | 10 | 1264 | 1 | 1264 | 0 | 7 | 1261589 | 1256295 |
AK128756 | Gold_excellent | 2 | 1927 | 1 | 1927 | 1 | 9 | 66086417 | 66083879 |
AK130216 | Gold_good | 2 | 715 | 1 | 715 | 5 | 9 | 2164924 | 2163967 |