| Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
| Method | The method or program, or GOLD. | |
| #Exon | The number of exons in the alignment. | |
| Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
| From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
| Aligned | The total number of bases aligned, not the last base of the alignment! | |
| #err | The number of point differences from the genome, as measured by Smith Waterman. | |
| Chrom | The chromosome number (or NT_ contig if unmapped). | |
| from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
| to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
| mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
| AK000582 | Gold_dubious | 4 | 1954 | 15 | 1955 | 43 | 15 | 69765990 | 69786773 |
| AK000586 | Gold_dubious | 8 | 1544 | 3 | 1542 | 45 | 20 | 55733779 | 55779360 |
| AK000814 | Gold_dubious | 8 | 1376 | 3 | 1374 | 31 | 15 | 39836356 | 39845835 |
| AK001481 | Gold_dubious | 8 | 3989 | 1 | 1283 | 7 | 1 | 12081129 | 12093398 |
| AK001609 | Gold_dubious | 3 | 2242 | 1 | 501 | 0 | 1 | 25420300 | 25438287 |
| AK002086 | Gold_dubious | 6 | 2435 | 1 | 1026 | 1 | 7 | 129712256 | 129699085 |
| AK021856 | Gold_dubious | 2 | 1496 | 1 | 1506 | 32 | 19 | 16609917 | 16603702 |
| AK021878 | Gold_dubious | 7 | 1632 | 1 | 1632 | 39 | 17 | 5295956 | 5329999 |
| AK022934 | Gold_dubious | 14 | 2748 | 1 | 1370 | 16 | 7 | 129769802 | 129699375 |
| AK023368 | Gold_dubious | 16 | 2925 | 1 | 2925 | 56 | X | 39582443 | 39541469 |
| AK023392 | Gold_dubious | 7 | 1782 | 1 | 1782 | 34 | X | 1166269 | 1179776 |
| AK023392 | Gold_dubious | 7 | 1782 | 1 | 1782 | 34 | Y | 1166269 | 1179776 |
| AK023880 | Gold_dubious | 2 | 2145 | 1 | 568 | 0 | 1 | 45586238 | 45578631 |
| AK024126 | Gold_dubious | 5 | 1449 | 2 | 1448 | 25 | 1 | 168610294 | 168651308 |
| AK024309 | Gold_dubious | 10 | 2566 | 1 | 2229 | 41 | 1 | 952269 | 923263 |
| AK024374 | Gold_dubious | 2 | 4144 | 1 | 4144 | 75 | 22 | 22324779 | 22319912 |
| AK024407 | Gold_dubious | 2 | 2345 | 41 | 2305 | 40 | 19 | 58388375 | 58359220 |
| AK025048 | Gold_dubious | 4 | 2475 | 2 | 2490 | 61 | 3 | 42048436 | 42028609 |
| AK025112 | Gold_bad | 1 | 1855 | 1 | 1018 | 9 | 3 | 124543762 | 124542746 |
| AK025112 | Gold_dubious | 5 | 1855 | 721 | 1135 | 27 | 7 | 5987235 | 6537832 |
| AK025415 | Gold_dubious | 4 | 1922 | 877 | 1046 | 2 | 22 | 48897363 | 48895436 |
| AK025436 | Gold_bad | 2 | 3358 | 1 | 170 | 0 | 1 | 28300909 | 28338663 |
| AK025436 | Gold_dubious | 5 | 3358 | 2029 | 1330 | 0 | 1 | 28503193 | 28511554 |
| AK025701 | Gold_dubious | 4 | 3703 | 2658 | 1046 | 3 | 22 | 48897363 | 48895436 |
| AK026660 | Gold_dubious | 1 | 2322 | 1847 | 476 | 1 | X | 132609679 | 132609204 |
| AK026800 | Gold_dubious | 6 | 1884 | 3 | 1049 | 6 | X|NT_079578 | 49913 | 34366 |
| AK026938 | Gold_dubious | 4 | 2230 | 2 | 2227 | 48 | Un|NT_079614 | 86687 | 43077 |
| AK027045 | Gold_dubious | 5 | 2695 | 1 | 2695 | 49 | 11 | 62296991 | 62291154 |
| AK027224 | Gold_dubious | 11 | 1978 | 1 | 1978 | 30 | 3 | 199003414 | 198942569 |
| AK027712 | Gold_bad | 1 | 3614 | 2763 | 40 | 1 | 7 | 99280495 | 99280456 |
| AK027712 | Gold_dubious | 7 | 3614 | 1 | 1539 | 4 | 12 | 131996999 | 132018379 |
| AK027893 | Gold_dubious | 3 | 1346 | 1 | 308 | 0 | 20 | 32046937 | 32031373 |
| AK054645 | Gold_dubious | 14 | 2423 | 1 | 2422 | 40 | 9 | 39278312 | 39093678 |
| AK054986 | Gold_dubious | 1 | 2144 | 1 | 2144 | 49 | 1 | 146996149 | 146994011 |
| AK056120 | Gold_dubious | 11 | 2814 | 100 | 2715 | 56 | 1|NT_079486 | 164318 | 176786 |
| AK056543 | Gold_dubious | 4 | 3504 | 2459 | 1046 | 2 | 22 | 48897363 | 48895436 |
| AK056760 | Gold_dubious | 6 | 1258 | 1 | 1258 | 19 | 7 | 75752021 | 75769286 |
| AK056778 | Gold_dubious | 10 | 1502 | 1 | 1502 | 42 | 11 | 64929482 | 64956353 |
| AK057071 | Gold_dubious | 4 | 2438 | 1 | 1014 | 7 | 9 | 69983674 | 70055285 |
| AK057798 | Gold_bad | 1 | 1682 | 1301 | 382 | 0 | 16 | 376331 | 376727 |
| AK057798 | Gold_dubious | 1 | 1682 | 1 | 1300 | 26 | 16 | 377479 | 378783 |
| AK057815 | Gold_dubious | 3 | 2226 | 21 | 2226 | 35 | 17 | 35874430 | 35846034 |
| AK057893 | Gold_bad | 1 | 1998 | 1130 | 314 | 0 | 9 | 134606215 | 134606528 |
| AK057893 | Gold_dubious | 1 | 1998 | 1440 | 559 | 1 | 17 | 74092731 | 74093289 |
| AK074198 | Gold_dubious | 4 | 2024 | 1 | 2024 | 55 | 9 | 65781802 | 65795390 |
| AK074623 | Gold_dubious | 2 | 3080 | 5 | 3092 | 52 | 1 | 225598620 | 225557866 |
| AK074630 | Gold_dubious | 3 | 2079 | 1 | 2079 | 34 | 8 | 27226095 | 27265319 |
| AK074662 | Gold_dubious | 2 | 3179 | 1 | 3179 | 57 | 21 | 43083733 | 43089673 |
| AK074932 | Gold_dubious | 4 | 2971 | 1926 | 1046 | 1 | 22 | 48897363 | 48895436 |
| AK075308 | Gold_bad | 1 | 1829 | 999 | 831 | 36 | 1 | 202449458 | 202448626 |
| AK075308 | Gold_dubious | 5 | 1829 | 1 | 1280 | 7 | 11 | 8897111 | 8905789 |
| AK090675 | Gold_dubious | 6 | 2147 | 1 | 2147 | 37 | 7 | 124124455 | 124373872 |
| AK091021 | Gold_dubious | 2 | 2840 | 1 | 2840 | 46 | 19 | 14161570 | 14166062 |
| AK092223 | Gold_dubious | 1 | 2017 | 1 | 2017 | 33 | 12 | 131586441 | 131584419 |
| AK092351 | Gold_bad | 2 | 4510 | 1 | 302 | 4 | 1 | 119958621 | 119958329 |
| AK092351 | Gold_dubious | 13 | 4510 | 2977 | 1534 | 1 | 1 | 145723710 | 145709590 |
| AK092382 | Gold_dubious | 11 | 827 | 1 | 827 | 24 | 1 | 21772989 | 21808508 |
| AK092495 | Gold_dubious | 8 | 1827 | 918 | 910 | 3 | 3 | 66226697 | 66361575 |
| AK093696 | Gold_dubious | 2 | 2059 | 1 | 2059 | 38 | 2 | 235650103 | 235648063 |
| AK093750 | Gold_dubious | 1 | 2247 | 1 | 2247 | 39 | 19 | 49324447 | 49326693 |
| AK094009 | Gold_bad | 1 | 2580 | 497 | 40 | 1 | 17 | 74022672 | 74022633 |
| AK094009 | Gold_dubious | 1 | 2580 | 1695 | 886 | 0 | 12 | 7058863 | 7057978 |
| AK094237 | Gold_dubious | 7 | 2025 | 1 | 2025 | 31 | 6 | 31471759 | 31487236 |
| AK094248 | Gold_dubious | 7 | 2318 | 1 | 2318 | 37 | 3 | 49425709 | 49419392 |
| AK094974 | Gold_dubious | 1 | 2459 | 947 | 30 | 0 | Y | 16733893 | 16733864 |
| AK095381 | Gold_dubious | 1 | 2574 | 1 | 2574 | 42 | 9 | 110058497 | 110061070 |
| AK095622 | Gold_dubious | 1 | 2948 | 1 | 2947 | 62 | 1 | 153599477 | 153596539 |
| AK096052 | Gold_dubious | 14 | 2369 | 1 | 2369 | 37 | 17 | 41308792 | 41321340 |
| AK096058 | Gold_bad | 3 | 2365 | 1266 | 1100 | 4 | X | 48047279 | 48049205 |
| AK096058 | Gold_dubious | 1 | 2365 | 1 | 1265 | 41 | X | 48040148 | 48038883 |
| AK096220 | Gold_dubious | 8 | 2872 | 14 | 2836 | 61 | 5 | 876949 | 763213 |
| AK096307 | Gold_dubious | 3 | 1888 | 1 | 850 | 2 | 20 | 32047479 | 32031373 |
| AK096402 | Gold_dubious | 1 | 3128 | 1 | 3128 | 57 | 19 | 23085578 | 23088705 |
| AK096951 | Gold_dubious | 1 | 3308 | 1 | 3308 | 54 | 22 | 14538827 | 14535518 |
| AK097051 | Gold_dubious | 3 | 2226 | 1 | 2235 | 58 | 6 | 42002492 | 41999924 |
| AK097059 | Gold_dubious | 4 | 1987 | 1 | 385 | 0 | 20 | 32046927 | 32031373 |
| AK097080 | Gold_dubious | 1 | 2420 | 1 | 2420 | 70 | 1 | 127056 | 124637 |
| AK097432 | Gold_dubious | 11 | 1914 | 1 | 1916 | 29 | 15 | 82789846 | 82782906 |
| AK097528 | Gold_bad | 2 | 2995 | 1328 | 1291 | 37 | 20 | 55776144 | 55792938 |
| AK097528 | Gold_dubious | 2 | 2995 | 1 | 1839 | 12 | 20 | 55782730 | 55784803 |
| AK097565 | Gold_dubious | 2 | 1198 | 1 | 251 | 0 | 9|NT_078081 | 87947 | 88538 |
| AK097584 | Gold_dubious | 1 | 1688 | 58 | 1631 | 29 | 10 | 133770363 | 133768736 |
| AK097877 | Gold_dubious | 1 | 1909 | 1 | 1919 | 38 | 16 | 29492159 | 29490241 |
| AK097932 | Gold_dubious | 2 | 2057 | 1 | 2057 | 43 | 1 | 198764609 | 198777291 |
| AK097954 | Gold_dubious | 2 | 2324 | 1 | 2324 | 42 | 16 | 74863520 | 74865852 |
| AK098337 | Gold_bad | 1 | 2493 | 2298 | 196 | 0 | 3 | 50114026 | 50114222 |
| AK098337 | Gold_dubious | 1 | 2493 | 1 | 2303 | 72 | 4 | 49094879 | 49097186 |
| AK098742 | Gold_dubious | 2 | 1864 | 5 | 1860 | 37 | 15 | 63234010 | 63240906 |
| AK122596 | Gold_dubious | 9 | 2417 | 1 | 2417 | 47 | 12 | 7791385 | 7771623 |
| AK123131 | Gold_dubious | 4 | 1916 | 871 | 1046 | 3 | 22 | 48897363 | 48895436 |
| AK123395 | Gold_dubious | 2 | 2217 | 1 | 2217 | 54 | 1 | 143757198 | 143731022 |
| AK123498 | Gold_bad | 1 | 2440 | 2103 | 338 | 2 | 6 | 24813406 | 24813071 |
| AK123498 | Gold_dubious | 13 | 2440 | 1 | 2103 | 44 | 2 | 48957397 | 48833964 |
| AK123504 | Gold_dubious | 2 | 1971 | 1 | 1971 | 39 | Un|NT_079614 | 51474 | 45414 |
| AK123973 | Gold_dubious | 2 | 2385 | 1 | 2385 | 65 | 14 | 89603059 | 89605632 |
| AK124038 | Gold_dubious | 1 | 2846 | 1 | 2846 | 48 | X | 109711113 | 109713960 |
| AK124122 | Gold_dubious | 2 | 1942 | 5 | 1942 | 40 | 9 | 43174779 | 43167772 |
| AK124574 | Gold_dubious | 1 | 3425 | 1 | 3425 | 60 | 12 | 8381402 | 8384825 |
| AK124803 | Gold_dubious | 1 | 2206 | 1 | 2206 | 39 | 1 | 227487454 | 227485243 |
| AK124805 | Gold_dubious | 1 | 2115 | 1 | 2130 | 61 | 7 | 15873612 | 15871489 |
| AK125174 | Gold_dubious | 1 | 3129 | 1 | 3129 | 57 | 3 | 196742085 | 196745213 |
| AK125237 | Gold_bad | 1 | 2222 | 1163 | 33 | 0 | 2 | 161738244 | 161738212 |
| AK125237 | Gold_bad | 1 | 2222 | 1857 | 75 | 5 | 5 | 54920043 | 54919967 |
| AK125237 | Gold_dubious | 4 | 2222 | 1 | 643 | 1 | 10 | 27551697 | 27581759 |
| AK125293 | Gold_bad | 1 | 2139 | 1400 | 33 | 1 | 3 | 143921800 | 143921768 |
| AK125293 | Gold_bad | 1 | 2139 | 1439 | 30 | 0 | 19 | 53978556 | 53978527 |
| AK125293 | Gold_dubious | 1 | 2139 | 1307 | 30 | 0 | 5 | 23205789 | 23205760 |
| AK125561 | Gold_dubious | 4 | 2244 | 40 | 2205 | 51 | 7 | 5313666 | 5311125 |
| AK125584 | Gold_dubious | 5 | 2980 | 2 | 2979 | 55 | 17|NT_079568 | 80066 | 75788 |
| AK125735 | Gold_bad | 1 | 1436 | 1336 | 101 | 3 | 5 | 75110872 | 75110973 |
| AK125735 | Gold_dubious | 5 | 1436 | 1 | 1057 | 20 | 5 | 75097538 | 75112756 |
| AK125792 | Gold_dubious | 18 | 3827 | 203 | 3625 | 73 | 1 | 143038457 | 143118990 |
| AK126007 | Gold_dubious | 2 | 3218 | 1 | 440 | 0 | 10 | 46973164 | 46969500 |
| AK126043 | Gold_bad | 2 | 4449 | 4003 | 447 | 0 | 12 | 122175716 | 122179018 |
| AK126043 | Gold_dubious | 1 | 4449 | 1 | 719 | 0 | 6 | 161473704 | 161474423 |
| AK126306 | Gold_bad | 1 | 3408 | 1959 | 121 | 0 | 2 | 120512225 | 120512346 |
| AK126306 | Gold_dubious | 13 | 3408 | 1 | 3294 | 61 | 2 | 120468345 | 120514973 |
| AK126394 | Gold_dubious | 4 | 3038 | 1999 | 1040 | 1 | 22 | 48897363 | 48895442 |
| AK126568 | Gold_dubious | 14 | 2254 | 1 | 2254 | 34 | 12 | 120548964 | 120614663 |
| AK126608 | Gold_dubious | 3 | 2707 | 112 | 2596 | 77 | 16 | 89836775 | 89852059 |
| AK126609 | Gold_dubious | 1 | 2767 | 1 | 2767 | 49 | 7 | 157834487 | 157831722 |
| AK126623 | Gold_dubious | 2 | 4596 | 1 | 4596 | 74 | 6 | 3204206 | 3213283 |
| AK126815 | Gold_dubious | 2 | 2511 | 1 | 2511 | 72 | 11 | 126344698 | 126331010 |
| AK126884 | Gold_dubious | 5 | 3448 | 2 | 3447 | 77 | 12 | 48560717 | 48555142 |
| AK126938 | Gold_dubious | 1 | 3409 | 1 | 3409 | 56 | 16 | 12263268 | 12266676 |
| AK126984 | Gold_dubious | 1 | 3553 | 1 | 3553 | 99 | 19 | 46026733 | 46030285 |
| AK127169 | Gold_dubious | 1 | 2009 | 3 | 2007 | 45 | 13 | 98975035 | 98973033 |
| AK127309 | Gold_dubious | 1 | 3462 | 3419 | 43 | 0 | 12 | 12822186 | 12822144 |
| AK127320 | Gold_dubious | 1 | 3413 | 3 | 3411 | 78 | 9 | 64376488 | 64373075 |
| AK127378 | Gold_dubious | 4 | 2638 | 698 | 1841 | 31 | 16 | 89833599 | 89852059 |
| AK127397 | Gold_dubious | 2 | 2187 | 1 | 2187 | 44 | 6 | 72080688 | 72078554 |
| AK127601 | Gold_dubious | 4 | 1821 | 1 | 1819 | 50 | 12 | 48560724 | 48557632 |
| AK127608 | Gold_dubious | 14 | 2400 | 7 | 2394 | 55 | 2 | 232531745 | 232522001 |
| AK128020 | Gold_dubious | 3 | 2451 | 1 | 310 | 0 | 9 | 128445217 | 128448385 |
| AK128042 | Gold_dubious | 1 | 3396 | 153 | 3244 | 61 | 2 | 896062 | 892823 |
| AK128103 | Gold_dubious | 1 | 3211 | 2850 | 362 | 1 | 20 | 47208892 | 47208531 |
| AK128295 | Gold_dubious | 1 | 1220 | 1 | 1188 | 33 | 4 | 39044390 | 39043202 |
| AK128491 | Gold_bad | 1 | 4174 | 2191 | 30 | 0 | 4 | 84870241 | 84870271 |
| AK128491 | Gold_bad | 1 | 4174 | 2298 | 33 | 0 | 15 | 33360170 | 33360203 |
| AK128491 | Gold_dubious | 1 | 4174 | 2069 | 41 | 1 | 10 | 111385718 | 111385759 |
| AK128694 | Gold_dubious | 3 | 4067 | 1 | 4067 | 109 | 5 | 38869048 | 38864983 |
| AK128845 | Gold_dubious | 5 | 3582 | 1 | 3133 | 54 | 19 | 56543596 | 56540240 |
| AK128866 | Gold_bad | 1 | 2163 | 225 | 824 | 22 | 19 | 52605534 | 52604709 |
| AK128866 | Gold_dubious | 2 | 2163 | 1 | 1520 | 20 | 19 | 52608705 | 52606928 |
| AK129627 | Gold_dubious | 7 | 1451 | 1 | 1448 | 30 | 17 | 9069590 | 8837390 |
| AK129636 | Gold_bad | 1 | 1646 | 1370 | 277 | 10 | 5 | 132329915 | 132329639 |
| AK129636 | Gold_bad | 2 | 1646 | 442 | 935 | 22 | 5 | 132331048 | 132316505 |
| AK129636 | Gold_dubious | 1 | 1646 | 1 | 309 | 1 | 5 | 132317287 | 132316979 |
| AK129721 | Gold_dubious | 1 | 2441 | 1 | 2441 | 57 | 5 | 132373494 | 132371053 |
| AK129961 | Gold_dubious | 1 | 1802 | 1 | 1802 | 29 | 17 | 81062187 | 81063991 |
| AK130023 | Gold_bad | 1 | 2022 | 1289 | 496 | 5 | 3 | 53183770 | 53184266 |
| AK130023 | Gold_bad | 1 | 2022 | 1779 | 244 | 0 | 3 | 53183739 | 53184002 |
| AK130023 | Gold_dubious | 3 | 2022 | 64 | 1157 | 41 | 3 | 53181854 | 53188008 |
| AK130265 | Gold_dubious | 1 | 2591 | 1 | 2591 | 62 | 17 | 76145510 | 76148099 |
| AK130278 | Gold_dubious | 8 | 2190 | 9 | 2193 | 35 | 17 | 831119 | 828243 |
| AK130333 | Gold_dubious | 2 | 1812 | 1 | 1812 | 29 | 22 | 29030142 | 29028355 |
| AK130510 | Gold_bad | 1 | 2344 | 2 | 821 | 18 | 12 | 109340755 | 109339935 |
| AK130510 | Gold_dubious | 4 | 2344 | 829 | 1516 | 25 | 12 | 109351800 | 109340787 |
| AK130751 | Gold_bad | 1 | 2208 | 1754 | 214 | 1 | 19 | 39389382 | 39389596 |
| AK130751 | Gold_bad | 1 | 2208 | 1959 | 250 | 0 | 7 | 127849559 | 127849809 |
| AK130751 | Gold_dubious | 1 | 2208 | 1 | 437 | 1 | 19 | 16533639 | 16533203 |
| AK130763 | Gold_bad | 1 | 2201 | 1 | 844 | 20 | 9 | 126513865 | 126514710 |
| AK130763 | Gold_dubious | 1 | 2201 | 840 | 1362 | 16 | 6 | 42047787 | 42046426 |
| AK130794 | Gold_bad | 2 | 1649 | 1201 | 452 | 15 | 8 | 66692855 | 66692394 |
| AK130794 | Gold_dubious | 3 | 1649 | 3 | 1191 | 12 | 8 | 66695934 | 66692067 |
| AK131084 | Gold_bad | 1 | 5537 | 5359 | 179 | 4 | 16 | 15164798 | 15164616 |
| AK131084 | Gold_bad | 7 | 5537 | 4520 | 804 | 11 | 16 | 14815487 | 14825487 |
| AK131084 | Gold_dubious | 5 | 5537 | 1 | 2252 | 5 | 16 | 15195709 | 15193017 |