Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AK024506 Gold_excellent 2 4433 1 4433 13 14 103932167 103937242
AK024836 Gold_excellent 6 1449 1 1449 2 6 31344618 31341276
AK025231 Gold_partial 2 2361 33 2329 24 22 21554563 21556899
AK026408 Gold_good 3 966 1 966 7 22 20989290 21000229
AK026595 Gold_bad 8 1533 7 1533 47 6 31429143 31425843
AK027084 Gold_dubious 7 1432 1 1432 42 6 30016149 30019485
AK027379 Gold_dubious 8 1605 1 1605 31 14 104663876 104145137
AK056727 Gold_good 2 2454 1 2454 20 6 30000792 29998300
AK056731 Gold_excellent 1 1696 4 1693 2 14 104092808 104091116
AK057065 Gold_bad 6 2216 1 2207 152 22 21335315 21573524
AK057174 Gold_dubious 3 2423 1 2423 65 22 20777701 21562565
AK057614 Gold_dubious 13 1764 1 1734 52 14 104787928 104276321
AK057617 Gold_bad 9 1699 1 1699 68 14 104466273 104276324
AK057754 Gold_bad 10 1594 1 1594 59 14 104849766 104179352
AK057775 Gold_bad 7 1589 3 1587 76 14 104849766 104179353
AK057837 Gold_excellent 7 1000 1 1000 2 14 103911441 103918174
AK057979 Gold_dubious 7 1528 1 1514 45 14 104777355 104024906
AK058027 Gold_bad 11 1600 1 1600 62 14 105142104 104145133
AK058037 Gold_bad 1 2013 1 248 1 4 57886964 57886717
AK058037 Gold_bad 7 2013 249 997 30 14 104849768 104180033
AK058037 Gold_dubious 4 2013 1258 756 18 22 21387932 21568169
AK058096 Gold_good 4 1499 1 1499 16 14 104910121 104948676
AK074651 Gold_dubious 10 1605 1 1594 26 14 104787928 104145137
AK090461 Gold_excellent 7 4274 1 4274 13 14 104343079 104276330
AK090464 Gold_good 12 4240 1 4240 43 14 104211056 104202517
AK090629 Gold_excellent 11 1830 1 1830 3 22 20977077 21001757
AK091845 Gold_excellent 8 1976 1 1976 0 14 103913872 103918174
AK092384 Gold_dubious 8 1593 1 1581 36 14 104939218 104145137
AK092741 Gold_excellent 3 2240 1 2240 7 14 103924330 103926798
AK092753 Gold_bad 1 1820 1 82 0 2 89087202 89087283
AK092753 Gold_dubious 1 1820 1454 367 5 2 89062396 89062030
AK092785 Gold_bad 7 1800 2 1799 74 14 105020867 104291998
AK092803 Gold_bad 8 1650 1 1557 48 14 104697409 104145137
AK092815 Gold_bad 4 1908 1 1908 68 2 89378788 89058824
AK092819 Gold_bad 1 1809 1 65 2 2 230248091 230248027
AK092819 Gold_bad 1 1809 76 143 1 5 71230815 71230958
AK092819 Gold_partial 3 1809 704 1106 4 14 104146677 104145137
AK092847 Gold_good 7 2182 1 2182 27 14 104355377 104106133
AK092921 Gold_dubious 5 2513 1 2513 40 6 29999906 30003303
AK092976 Gold_bad 10 1658 1 1605 66 14 104939222 104179360
AK093108 Gold_excellent 2 2140 6 2145 2 22 21199167 21192617
AK093400 Gold_excellent 2 1842 1 1842 2 14 104410034 104407495
AK093478 Gold_good 7 1898 2 1897 21 6 29902775 29906806
AK093636 Gold_bad 2 1625 13 288 34 14 105071342 105070953
AK093636 Gold_bad 4 1625 504 1134 13 14 104181093 104179353
AK093721 Gold_bad 8 1621 3 1560 52 14 104763209 104145133
AK093806 Gold_bad 10 1642 1 1598 49 14 104985153 104179361
AK093943 Gold_bad 13 1708 1 1708 96 14 104752658 104276330
AK094832 Gold_good 1 1890 1 1890 22 22 20955489 20953601
AK095222 Gold_bad 6 1588 1 1488 53 14 104849769 104145137
AK096938 Gold_dubious 4 944 1 944 20 2 89424086 89058824
AK096985 Gold_bad 8 1593 1 1519 60 14 105142101 104145137
AK097010 Gold_bad 9 1631 1 1612 53 14 104697409 104179353
AK097017 Gold_dubious 10 1612 1 1612 46 14 105103236 104145133
AK097028 Gold_bad 6 1598 1 1598 67 14 104939226 104145137
AK097035 Gold_bad 2 2168 103 2036 82 22 21560797 21562844
AK097040 Gold_bad 4 1954 401 1554 137 22 21566355 21573524
AK097042 Gold_dubious 2 1810 1 601 0 2 89378788 89058824
AK097071 Gold_dubious 7 1991 1 1991 37 14 105085950 104291998
AK097076 Gold_bad 6 1615 1 1615 80 14 104966022 104145133
AK097206 Gold_bad 3 1624 1 431 55 14 104966022 104946183
AK097206 Gold_bad 4 1624 498 1127 16 14 104181086 104179354
AK097303 Gold_bad 11 1618 1 1618 62 14 104985153 104145137
AK097305 Gold_dubious 10 1611 1 1503 45 14 105142101 104145137
AK097306 Gold_bad 14 1612 1 1609 52 14 104898400 104081082
AK097307 Gold_bad 12 1821 3 1720 54 14 104787926 104207116
AK097320 Gold_bad 6 1627 1 1627 71 14 104545436 104145137
AK097328 Gold_bad 3 1912 639 1274 69 22 21566593 21573524
AK097329 Gold_bad 6 1607 1 1607 65 14 104898400 104145130
AK097345 Gold_bad 6 1608 1 1608 74 14 104490608 104145137
AK097348 Gold_bad 2 1583 1 404 48 14 104443404 104442916
AK097348 Gold_bad 3 1583 475 1109 1 14 104146677 104145133
AK097350 Gold_bad 11 1627 1 1627 69 14 104787928 104106132
AK097353 Gold_bad 6 929 1 929 54 2 89470400 89058824
AK097354 Gold_bad 7 1613 1 1613 81 14 104939215 104179353
AK097355 Gold_bad 13 1763 1 1763 103 14 105071342 104207116
AK097356 Gold_bad 7 1613 1 1613 77 14 105142101 104179353
AK097357 Gold_bad 9 1605 1 1577 62 14 104939215 104179352
AK097359 Gold_dubious 5 1622 4 1249 25 14 104490605 104179353
AK097360 Gold_bad 7 1618 1 1618 73 14 105142097 104179353
AK097361 Gold_bad 9 1628 1 1613 60 14 105142103 104179352
AK097362 Gold_bad 6 1559 1 1559 73 14 105055400 104145137
AK097363 Gold_bad 10 1613 1 1582 61 14 105142103 104179352
AK097364 Gold_bad 9 1602 1 1579 54 14 105142098 104179352
AK097365 Gold_bad 12 1566 1 1566 87 14 104866129 104179353
AK097366 Gold_dubious 7 1620 2 1407 41 14 104787926 104179360
AK097367 Gold_bad 9 1633 1 1565 48 14 104524485 104179352
AK097572 Gold_bad 10 1763 1 1763 76 14 104787928 104207117
AK097608 Gold_excellent 4 2475 1 2475 4 22 21188059 21166579
AK097634 Gold_excellent 1 2684 1 2684 8 14 104628060 104625378
AK097859 Gold_dubious 11 1629 5 1614 46 14 104966022 104179361
AK097906 Gold_dubious 11 2037 1 2037 40 14 104511246 104207116
AK097950 Gold_bad 7 1627 1 1627 82 14 104697409 104179360
AK097955 Gold_dubious 10 1625 3 1589 24 14 105151014 104145137
AK098007 Gold_good 5 2026 1 2026 16 6 32778316 32770884
AK098108 Gold_bad 10 1759 1 1759 78 14 104663862 104207116
AK098153 Gold_bad 15 1790 1 1790 82 14 104763211 104207117
AK098158 Gold_bad 1 2081 8 81 2 22 21331463 21331544
AK098158 Gold_bad 3 2081 927 1155 70 22 21566932 21573522
AK098516 Gold_bad 8 1596 1 1570 50 14 104777355 104179353
AK098817 Gold_bad 1 1990 1722 269 0 11 62059003 62058735
AK098817 Gold_dubious 10 1990 1 1618 34 14 104697409 104179351
AK122924 Gold_excellent 1 4231 1 4231 1 14 104110907 104115137
AK123070 Gold_dubious 5 1612 345 1185 19 14 104510819 104179360
AK123542 Gold_bad 1 1749 1 125 0 X 105732149 105732025
AK123542 Gold_bad 1 1749 122 455 5 14 104147092 104147547
AK123542 Gold_partial 2 1749 948 802 2 14 104146160 104145137
AK123546 Gold_bad 6 1609 1 1609 80 14 104524485 104145137
AK123783 Gold_dubious 10 1624 3 1579 38 14 104898398 104145137
AK123800 Gold_partial 4 1615 477 1139 11 14 104181097 104179353
AK123975 Gold_bad 9 1591 1 1591 60 14 104490608 104024902
AK123981 Gold_bad 10 1772 3 1770 66 14 104582526 104207124
AK124160 Gold_dubious 8 1793 1 1793 44 6 31429180 31425837
AK125079 Gold_dubious 13 1554 1 1522 38 14 105055433 104024902
AK125238 Gold_bad 8 1597 1 1577 63 14 104939218 104145133
AK125582 Gold_bad 8 1618 1 1618 84 14 104545436 104145137
AK125585 Gold_bad 3 2198 1 2198 72 22 21059756 21573522
AK125608 Gold_bad 6 1902 1 1900 61 6 30016149 30019388
AK125627 Gold_good 6 2936 1 2936 18 14 104355514 104363501
AK125629 Gold_partial 3 2108 1 1536 16 22 21547455 21573524
AK125632 Gold_bad 9 1632 1 1579 56 14 104985153 104179353
AK125633 Gold_partial 5 1556 478 1079 13 14 104181097 104179353
AK125703 Gold_partial 7 1718 427 1292 7 14 104302150 104276324
AK126003 Gold_excellent 1 3227 1 3227 5 2 89009889 89013116
AK126132 Gold_bad 7 1620 1 1620 61 14 104490608 104179352
AK126133 Gold_bad 10 1745 1 1745 78 14 105142094 104207116
AK126233 Gold_excellent 2 3294 1 3294 3 14 104704828 104708159
AK126279 Gold_bad 6 1623 1 1623 72 14 104763211 104145131
AK126280 Gold_bad 10 2129 1 2129 102 14 104801737 104274776
AK126281 Gold_dubious 9 1624 1 1497 44 14 104613727 104179353
AK126320 Gold_dubious 7 3361 1 3354 83 14 104985153 104298790
AK126352 Gold_bad 7 1537 1 1510 55 14 104849768 104024902
AK126358 Gold_bad 10 1766 1 1766 85 14 104966022 104207117
AK126543 Gold_bad 6 1582 1 1582 70 14 104443404 104145137
AK127409 Gold_dubious 7 1645 1 1644 48 14 105183147 104179353
AK127411 Gold_bad 8 2245 1 2120 79 22 21547455 21568169
AK127415 Gold_dubious 8 1628 1 1592 34 14 104663879 104179353
AK127921 Gold_dubious 8 1564 1 1555 42 14 104801738 104145137
AK128301 Gold_dubious 11 3075 4 3072 60 14 104697364 104174357
AK128313 Gold_dubious 9 1639 1 1630 40 14 104787928 104179360
AK128394 Gold_bad 7 1622 1 1622 81 14 105142098 104179353
AK128421 Gold_dubious 11 2967 2 2966 49 14 104777359 104077573
AK128476 Gold_dubious 6 1602 1 1602 44 14 105103236 104145137
AK128477 Gold_bad 9 1640 1 1603 60 14 104763211 104062356
AK128524 Gold_dubious 4 4067 1 4067 99 2 89344769 89058824
AK128525 Gold_bad 5 3396 1 3188 134 2 89287362 89060281
AK128533 Gold_dubious 5 1288 1 1288 29 14 104697409 104145137
AK128565 Gold_good 7 1603 1 1603 17 14 104524485 104145137
AK128568 Gold_dubious 8 3486 2 3485 78 14 104777359 104276486
AK128579 Gold_bad 11 3183 3 3181 107 14 105055398 104202517
AK128580 Gold_dubious 8 3626 1 3626 61 14 104777357 104276330
AK128614 Gold_good 10 3689 1 3676 53 14 104763211 104276324
AK128625 Gold_dubious 8 3699 1 3699 79 14 104524485 104276324
AK128635 Gold_dubious 8 3704 1 3704 111 14 104663879 104276330
AK128638 Gold_bad 2 3450 1 389 13 2 89087207 89087814
AK128638 Gold_good 2 3450 392 3059 35 2 89063214 89060182
AK128649 Gold_dubious 6 3821 1 3821 78 14 104801737 104276330
AK128652 Gold_bad 7 3590 1 3590 175 14 104787928 104145133
AK128658 Gold_dubious 8 3705 2 3704 90 14 104763211 104276327
AK128664 Gold_bad 9 1623 1 1623 59 14 104966022 104145137
AK129508 Gold_bad 9 1639 1 1551 47 14 104524485 104179352
AK129510 Gold_dubious 8 1626 1 1601 39 14 104985153 104179353
AK129512 Gold_dubious 15 1589 2 1501 37 14 105142101 104179360
AK129514 Gold_bad 7 1586 1 1533 50 14 104849768 104179353
AK129517 Gold_bad 7 1603 1 1603 75 14 104424844 104179352
AK129585 Gold_bad 4 885 1 842 47 22 21425745 21568166
AK129592 Gold_bad 6 1599 1 1599 76 14 104849768 104145137
AK129603 Gold_bad 4 885 1 885 50 22 21489831 21568166
AK129620 Gold_dubious 12 1575 1 1574 39 14 105067279 104145133
AK129622 Gold_bad 9 1615 1 1563 55 14 105142101 104179360
AK129637 Gold_bad 12 1593 1 1579 60 14 104849768 104179361
AK129776 Gold_bad 7 1632 1 1615 52 14 104697409 104179352
AK129777 Gold_bad 6 1451 1 1451 53 14 105142101 104179353
AK129779 Gold_bad 1 946 1 80 2 2 89087203 89087282
AK129779 Gold_partial 1 946 430 517 0 2 89059340 89058824
AK129783 Gold_excellent 5 2048 16 2048 2 22 21224577 21214682
AK129787 Gold_bad 10 1604 1 1561 50 14 104746232 104179352
AK129796 Gold_bad 8 1537 1 1537 48 6 31429147 31425843
AK129807 Gold_dubious 4 938 1 938 16 2 89344768 89058824
AK129809 Gold_dubious 6 1531 1 1456 25 14 105142104 104179360
AK129812 Gold_dubious 7 1621 1 1621 44 14 104663879 104179352
AK129817 Gold_good 4 928 1 928 8 2 89212121 89058824
AK130137 Gold_dubious 8 1537 1 1537 43 6 31429147 31425843
AK130148 Gold_bad 8 1532 16 1533 46 6 30016149 30019485
AK130153 Gold_bad 8 1434 14 1435 45 6 30016149 30019387
AK130155 Gold_dubious 8 1540 7 1540 40 6 31429143 31425836
AK130165 Gold_dubious 8 1532 18 1533 44 6 30016149 30019485
AK130166 Gold_dubious 8 1538 1 1538 39 6 31429147 31425843
AK130169 Gold_dubious 8 1537 7 1538 39 6 31429147 31425843
AK130415 Gold_bad 6 953 2 952 50 22 21344745 21562565
AK130433 Gold_dubious 11 1611 1 1587 45 14 105103236 104145137
AK130434 Gold_bad 1 1639 1 136 6 14 104582528 104582393
AK130434 Gold_dubious 4 1639 505 1135 23 14 104209428 104179352
AK130453 Gold_dubious 11 1636 1 1586 43 14 104663879 104145133
AK130461 Gold_bad 5 887 1 854 32 22 21459535 21568169
AK130465 Gold_dubious 7 1584 1 1536 27 14 104777354 104145137
AK130468 Gold_dubious 11 1645 20 1582 37 14 105184701 104145133
AK130476 Gold_partial 4 1628 477 1152 8 14 104302143 104145133
AK130501 Gold_bad 9 1615 1 1550 54 14 104966022 104145133
AK130519 Gold_bad 2 1230 912 319 1 4 71214461 71217792
AK130519 Gold_partial 6 1230 1 897 11 22 21425743 21568172
AK130529 Gold_bad 6 1585 1 1585 77 14 104849766 104145137
AK130539 Gold_partial 5 1600 442 1147 16 14 104302142 104179373
AK130577 Gold_dubious 5 1642 1 1249 23 14 104763211 104179360
AK130585 Gold_bad 7 1581 1 1581 80 14 104752656 104179353
AK130586 Gold_bad 7 1615 1 1614 82 14 104545436 104179368
AK130589 Gold_bad 10 1482 1 1482 50 14 104849768 104179352
AK130592 Gold_good 11 1448 5 1444 11 6 31429143 31341278
AK130598 Gold_good 5 1474 1 1474 12 6 32656343 32662569
AK130609 Gold_bad 11 1578 2 1555 54 14 104849767 104081082
AK130611 Gold_dubious 11 1582 1 1553 41 14 104849768 104179354
AK130614 Gold_dubious 9 1607 4 1553 32 14 104490605 104081083
AK130642 Gold_bad 13 1610 1 1573 64 14 105142094 104179352
AK130654 Gold_bad 10 1483 1 1483 57 6 31429146 31425836
AK130786 Gold_dubious 12 1594 1 1557 45 14 105142101 104179360
AK130796 Gold_dubious 8 1575 1 1538 32 14 104777357 104145137
AK130811 Gold_bad 5 1152 1 1152 86 6 32656341 32662240
AK130813 Gold_dubious 10 1589 4 1575 45 14 104752655 104179353
AK130817 Gold_bad 9 1609 1 1573 53 14 104777358 104179352
AK130825 Gold_dubious 8 1903 1 1856 33 14 104424844 104037954
AK130838 Gold_excellent 5 1465 1 1465 0 6 32656341 32662563
AK130844 Gold_bad 7 1621 1 1621 61 14 104545436 104179352
AK131045 Gold_bad 11 1589 1 1515 46 14 105142091 104081082
AK131065 Gold_bad 6 1607 1 1607 58 14 105142101 104145133