Legend : mRNA The GenBank/DDBJ/EMBL accession.
Method The method or program, or GOLD.
#Exon The number of exons in the alignment.
Length The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector.
From The first base aligned, in coordinate on the accession as it is in GenBank.
Aligned The total number of bases aligned, not the last base of the alignment!
#err The number of point differences from the genome, as measured by Smith Waterman.
Chrom The chromosome number (or NT_ contig if unmapped).
from The beginning of the alignment on the genome, in basepairs, calling 1 the first base.
to The end of the alignemnt. If End < From, the cDNA aligns on the minus strand.

mRNA Method #Exon Length From Aligned #err Chrom from to
AB007922 Gold_partial 41 10969 1 9534 1 1 12046724 12251505
AB007925 Gold_bad 8 6293 138 1291 6 1 141856662 141753697
AB007925 Gold_partial 12 6293 1429 4829 4 1 203672946 203721478
AB018343 Gold_partial 27 5984 1 5843 4 3 51493049 51392346
AB033019 Gold_partial 17 7118 5 6811 11 19 287175 252444
AB033031 Gold_bad 1 4470 3818 88 0 14 72170929 72170842
AB033031 Gold_excellent 13 4470 1 4390 0 19 54790585 54821507
AB046829 Gold_partial 8 4683 27 4613 20 16 84311409 84290181
AB051431 Gold_excellent 4 6440 1 6419 3 22 42950931 42897857
AB058703 Gold_partial 13 4156 1 4069 4 2 170628260 170586934
AB058776 Gold_bad 8 3970 1663 1184 0 12 30773217 30759158
AB058776 Gold_excellent 13 3970 1 2771 0 12 30775649 30753755
AB067468 Gold_partial 6 6309 1 6053 26 19 4464705 4453210
AB067496 Gold_excellent 14 5305 1 5280 16 5 209043 237758