Legend : | mRNA | The GenBank/DDBJ/EMBL accession. |
Method | The method or program, or GOLD. | |
#Exon | The number of exons in the alignment. | |
Length | The length of the cDNA to be aligned; i.e. the length of the accession minus the eventual poly A and vector. | |
From | The first base aligned, in coordinate on the accession as it is in GenBank. | |
Aligned | The total number of bases aligned, not the last base of the alignment! | |
#err | The number of point differences from the genome, as measured by Smith Waterman. | |
Chrom | The chromosome number (or NT_ contig if unmapped). | |
from | The beginning of the alignment on the genome, in basepairs, calling 1 the first base. | |
to | The end of the alignemnt. If End < From, the cDNA aligns on the minus strand. |
mRNA | Method | #Exon | Length | From | Aligned | #err | Chrom | from | to |
AB007922 | Gold_partial | 41 | 10969 | 1 | 9534 | 1 | 1 | 12046724 | 12251505 |
AB007925 | Gold_bad | 8 | 6293 | 138 | 1291 | 6 | 1 | 141856662 | 141753697 |
AB007925 | Gold_partial | 12 | 6293 | 1429 | 4829 | 4 | 1 | 203672946 | 203721478 |
AB018343 | Gold_partial | 27 | 5984 | 1 | 5843 | 4 | 3 | 51493049 | 51392346 |
AB033019 | Gold_partial | 17 | 7118 | 5 | 6811 | 11 | 19 | 287175 | 252444 |
AB033031 | Gold_bad | 1 | 4470 | 3818 | 88 | 0 | 14 | 72170929 | 72170842 |
AB033031 | Gold_excellent | 13 | 4470 | 1 | 4390 | 0 | 19 | 54790585 | 54821507 |
AB046829 | Gold_partial | 8 | 4683 | 27 | 4613 | 20 | 16 | 84311409 | 84290181 |
AB051431 | Gold_excellent | 4 | 6440 | 1 | 6419 | 3 | 22 | 42950931 | 42897857 |
AB058703 | Gold_partial | 13 | 4156 | 1 | 4069 | 4 | 2 | 170628260 | 170586934 |
AB058776 | Gold_bad | 8 | 3970 | 1663 | 1184 | 0 | 12 | 30773217 | 30759158 |
AB058776 | Gold_excellent | 13 | 3970 | 1 | 2771 | 0 | 12 | 30775649 | 30753755 |
AB067468 | Gold_partial | 6 | 6309 | 1 | 6053 | 26 | 19 | 4464705 | 4453210 |
AB067496 | Gold_excellent | 14 | 5305 | 1 | 5280 | 16 | 5 | 209043 | 237758 |